Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A3P25940 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
COL5A3P25940 ADAM24P-201ENST00000398655 2101 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL5A3P25940 MFSD8-242ENST00000641690 4199 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL5A3P25940 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A3P25940 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 BMS1P19-201ENST00000433925 393 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.69□□□□□ -1.5
COL5A3P25940 RPL35AP21-201ENST00000437667 333 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 RPL7P33-201ENST00000444159 742 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 AC245028.2-201ENST00000458673 253 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A3P25940 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.69□□□□□ -1.5
COL5A3P25940 RN7SL600P-201ENST00000581811 299 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 AC022417.1-201ENST00000624768 1303 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 AL669831.5-218ENST00000591702 1873 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A3P25940 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A3P25940 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
COL5A3P25940 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 AC005261.2-201ENST00000593427 4258 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A3P25940 AP001029.2-203ENST00000589795 4910 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL5A3P25940 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL5A3P25940 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.69□□□□□ -1.5
COL5A3P25940 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL5A3P25940 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A3P25940 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 RNU1-132P-201ENST00000364300 164 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A3P25940 SAP18P1-201ENST00000512058 390 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 MTCO1P49-201ENST00000523429 802 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A3P25940 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 AC007546.1-201ENST00000619452 559 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
COL5A3P25940 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 AC007159.1-201ENST00000566529 4706 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.68□□□□□ -1.5
COL5A3P25940 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
COL5A3P25940 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL5A3P25940 AC097374.1-203ENST00000400783 485 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 SNORA11F-201ENST00000408237 128 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AC104333.2-201ENST00000422630 192 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A3P25940 AL356276.2-201ENST00000435919 558 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL5A3P25940 RPS27AP13-201ENST00000498403 237 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.68□□□□□ -1.5
COL5A3P25940 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 AC108064.1-201ENST00000513791 460 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 MIR2116-201ENST00000517221 80 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AC105233.3-201ENST00000531125 744 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.68□□□□□ -1.5
COL5A3P25940 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.68□□□□□ -1.5
COL5A3P25940 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.68□□□□□ -1.5
COL5A3P25940 BPIFA4P-203ENST00000603168 689 ntBASIC5.68□□□□□ -1.5
COL5A3P25940 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 CASC19-206ENST00000641028 1430 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL5A3P25940 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A3P25940 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 TRAV35-201ENST00000390462 330 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A3P25940 AC006326.1-201ENST00000445465 787 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 BTF3P6-201ENST00000448054 499 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A3P25940 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.67□□□□□ -1.5
COL5A3P25940 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A3P25940 AC039056.2-201ENST00000622261 511 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 AC015804.1-201ENST00000622935 435 ntBASIC5.67□□□□□ -1.5
COL5A3P25940 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A3P25940 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms