Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 DUTP1-201ENST00000493631 470 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC126615.2-201ENST00000553003 515 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC124283.4-201ENST00000581815 456 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC011458.1-201ENST00000604034 617 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 HIRAP1-201ENST00000605318 787 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AL135786.2-201ENST00000608422 615 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AL392048.1-201ENST00000613946 534 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC093875.1-201ENST00000623688 504 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC100871.1-201ENST00000507871 1456 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MIR16-2-201ENST00000362117 81 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MIR620-201ENST00000385232 95 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MIR130A-201ENST00000385274 89 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 HSPE1P16-201ENST00000426640 348 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC092106.1-201ENST00000444291 373 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 RPS23P7-201ENST00000466210 444 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC020898.1-201ENST00000474167 787 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC073610.1-201ENST00000489971 396 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC025459.1-201ENST00000504072 156 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 CD69-203ENST00000536709 1020 ntTSL 2 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC104229.1-201ENST00000561364 255 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AP003117.1-201ENST00000602771 554 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 NANOGP3-201ENST00000605855 286 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AL391834.2-201ENST00000609982 546 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC008759.3-201ENST00000613300 508 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC007786.3-201ENST00000615154 596 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC090607.5-201ENST00000615692 224 ntBASIC5.22□□□□□ -1.57
COL28A1Q2UY09 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL28A1Q2UY09 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.21□□□□□ -1.57
COL28A1Q2UY09 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 INTS6P1-201ENST00000504674 2530 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 RNA5SP479-201ENST00000364858 117 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC068538.1-201ENST00000376856 336 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms