Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TMF1P1-201ENST00000576058 373 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 MIR4489-201ENST00000578869 62 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 MIR3936-201ENST00000584304 110 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 MTCO3P22-201ENST00000603219 784 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AC007423.1-201ENST00000605009 627 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 MIR6768-201ENST00000610734 72 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AL109620.1-201ENST00000618738 1197 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.07□□□□□ -1.6
HNF4AP41235 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 RNU4-39P-201ENST00000362455 127 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC007618.1-201ENST00000366455 732 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 RNU6-185P-201ENST00000384421 107 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC092642.1-201ENST00000392417 425 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AL136116.2-201ENST00000404020 785 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 GSTM3P2-201ENST00000412746 530 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 RPL12P9-201ENST00000412942 488 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC105402.1-201ENST00000413336 545 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 MTND2P11-201ENST00000423638 648 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC009965.2-201ENST00000425328 970 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HNF4AP41235 NPM1P24-201ENST00000428039 894 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 RPS26P4-201ENST00000431743 355 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 TRIM60P13-201ENST00000432350 1283 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.07□□□□□ -1.6
HNF4AP41235 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.07□□□□□ -1.6
HNF4AP41235 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.07□□□□□ -1.6
HNF4AP41235 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 AL606490.1-201ENST00000452266 765 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 MTND3P4-201ENST00000453537 303 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 OR2AF1P-201ENST00000454899 889 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC089999.1-201ENST00000460336 374 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 OR2AO1P-201ENST00000476497 403 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 MTND6P6-201ENST00000478031 263 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
HNF4AP41235 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC090515.3-201ENST00000560431 315 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.07□□□□□ -1.6
HNF4AP41235 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC008814.1-201ENST00000603797 406 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC003001.2-201ENST00000616294 831 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.07□□□□□ -1.6
HNF4AP41235 MIR6837-201ENST00000620884 64 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.07□□□□□ -1.6
HNF4AP41235 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 AL355480.1-201ENST00000629041 99 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.07□□□□□ -1.6
HNF4AP41235 CASC19-264ENST00000641912 1184 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 SCARNA15-201ENST00000607520 4325 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HNF4AP41235 AL118496.1-201ENST00000440201 1812 ntBASIC5.07□□□□□ -1.6
HNF4AP41235 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.06□□□□□ -1.6
HNF4AP41235 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC025574.1-201ENST00000554784 1653 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.06□□□□□ -1.6
HNF4AP41235 OR55B1P-203ENST00000641518 2602 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
HNF4AP41235 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 RPL21P67-201ENST00000402896 478 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AC013404.1-201ENST00000413068 249 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AC093655.2-201ENST00000425735 631 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms