Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
USP41Q3LFD5 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP41Q3LFD5 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 TCP1P3-201ENST00000414406 1498 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC012618.3-205ENST00000637896 1496 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 OR9G4-201ENST00000302957 984 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 RNA5SP428-201ENST00000365129 132 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 RNA5SP87-201ENST00000384155 118 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 SNORA66-201ENST00000384792 133 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 MIR589-201ENST00000385238 99 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL513321.1-201ENST00000441175 761 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 NOP56P2-201ENST00000447491 769 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL627224.1-201ENST00000448334 444 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 CABYRP1-201ENST00000465493 1045 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC023424.1-201ENST00000496058 459 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC010468.3-201ENST00000508225 458 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC093770.1-201ENST00000511559 571 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC019227.1-201ENST00000526902 510 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC021006.3-201ENST00000530771 192 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 NMNAT1P1-201ENST00000554095 876 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 MIR7853-201ENST00000584820 132 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC005776.1-201ENST00000603164 290 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC011626.1-201ENST00000604710 562 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 KATNBL1P5-201ENST00000605015 517 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC105105.5-201ENST00000622635 1294 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC017002.4-201ENST00000604721 1525 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 GVINP1-202ENST00000531871 7271 ntBASIC5.47□□□□□ -1.53
USP41Q3LFD5 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP41Q3LFD5 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
USP41Q3LFD5 CDC27P2-201ENST00000425026 1922 ntBASIC5.46□□□□□ -1.53
USP41Q3LFD5 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.53
USP41Q3LFD5 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP41Q3LFD5 AC068870.3-201ENST00000625077 2536 ntBASIC5.46□□□□□ -1.53
USP41Q3LFD5 IRF5P1-201ENST00000504852 2164 ntBASIC5.46□□□□□ -1.53
USP41Q3LFD5 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP41Q3LFD5 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP41Q3LFD5 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP41Q3LFD5 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP41Q3LFD5 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP41Q3LFD5 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 RN7SKP113-201ENST00000363891 295 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AL672167.2-201ENST00000377164 879 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 GSTA12P-201ENST00000402398 508 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 GNG5P5-201ENST00000420444 220 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AL121882.1-201ENST00000422893 417 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC008072.1-201ENST00000434254 824 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC090018.1-201ENST00000434369 367 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC239798.3-201ENST00000454459 408 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 HMGB1P3-201ENST00000502802 616 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC021087.2-201ENST00000504656 1203 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 OR8A2P-201ENST00000528631 952 ntBASIC5.46□□□□□ -1.54
USP41Q3LFD5 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.46□□□□□ -1.54
USP41Q3LFD5 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms