Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXD4P09016 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 OR2AH1P-201ENST00000425717 928 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC017019.1-201ENST00000426129 261 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AL360081.1-201ENST00000428299 555 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 HSPD1P12-201ENST00000429127 1069 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC124944.2-201ENST00000429866 1242 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 TMX2P1-201ENST00000436507 708 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 AL138787.1-202ENST00000437804 898 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC016772.1-201ENST00000444170 1261 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 RN7SL244P-201ENST00000493405 297 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC105233.1-201ENST00000498840 781 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXD4P09016 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC079064.1-201ENST00000528365 362 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC005000.1-201ENST00000536192 288 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC011270.1-201ENST00000558606 583 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 MTCYBP13-201ENST00000578634 1093 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXD4P09016 ELOCP28-201ENST00000590044 317 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC022387.2-201ENST00000604050 448 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AL162431.4-201ENST00000604674 411 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AL356608.1-201ENST00000610034 820 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC093799.2-201ENST00000610062 578 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC105105.5-201ENST00000622635 1294 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC106730.3-201ENST00000624568 641 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 AC073869.10-201ENST00000642016 354 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 NXF4-202ENST00000416098 1465 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXD4P09016 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXD4P09016 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HOXD4P09016 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXD4P09016 OR51C1P-202ENST00000641159 1444 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXD4P09016 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HOXD4P09016 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HOXD4P09016 RN7SKP104-201ENST00000362605 328 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 RPL21P67-201ENST00000402896 478 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 RPL26P29-201ENST00000415623 438 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC245028.1-201ENST00000423259 256 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 USP9YP9-201ENST00000429406 715 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 RPL7L1P1-201ENST00000448259 785 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXD4P09016 RPL37AP8-201ENST00000494116 276 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXD4P09016 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 GSTP1P1-201ENST00000548078 319 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXD4P09016 AL121839.1-201ENST00000556233 1185 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 MIR4330-201ENST00000579077 105 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXD4P09016 PRPF19P1-201ENST00000584766 898 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AP000769.2-201ENST00000602344 396 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 AC087783.2-201ENST00000605070 562 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXD4P09016 AC104307.1-201ENST00000616142 196 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 MIR6810-201ENST00000622701 70 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.66□□□□□ -1.66
HOXD4P09016 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXD4P09016 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
HOXD4P09016 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXD4P09016 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms