Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGB1P09429 MTDHP1-201ENST00000605323 784 ntBASIC23.03■■□□□ 1.28
HMGB1P09429 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGB1P09429 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
HMGB1P09429 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGB1P09429 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
HMGB1P09429 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 ZNF815P-204ENST00000434898 1737 ntBASIC23.02■■□□□ 1.28
HMGB1P09429 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 ANKRD18DP-204ENST00000455355 1975 ntBASIC23.02■■□□□ 1.28
HMGB1P09429 AL032819.2-201ENST00000624543 2162 ntBASIC23.02■■□□□ 1.28
HMGB1P09429 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 ESRRAP1-201ENST00000400596 1257 ntBASIC23.02■■□□□ 1.28
HMGB1P09429 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC23.02■■□□□ 1.28
HMGB1P09429 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.02■■□□□ 1.28
HMGB1P09429 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC23.02■■□□□ 1.28
HMGB1P09429 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
HMGB1P09429 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
HMGB1P09429 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB1P09429 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC23.01■■□□□ 1.27
HMGB1P09429 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
HMGB1P09429 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC23.01■■□□□ 1.27
HMGB1P09429 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.01■■□□□ 1.27
HMGB1P09429 Six3os1_6.1-201ENST00000620790 196 ntBASIC23.01■■□□□ 1.27
HMGB1P09429 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
HMGB1P09429 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
HMGB1P09429 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB1P09429 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.01■■□□□ 1.27
HMGB1P09429 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB1P09429 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23■■□□□ 1.27
HMGB1P09429 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 NBPF21P-201ENST00000425093 1451 ntBASIC23■■□□□ 1.27
HMGB1P09429 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
HMGB1P09429 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
HMGB1P09429 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
HMGB1P09429 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23■■□□□ 1.27
HMGB1P09429 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23■■□□□ 1.27
HMGB1P09429 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC23■■□□□ 1.27
HMGB1P09429 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23■■□□□ 1.27
HMGB1P09429 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
HMGB1P09429 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23■■□□□ 1.27
HMGB1P09429 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23■■□□□ 1.27
HMGB1P09429 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC23■■□□□ 1.27
HMGB1P09429 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB1P09429 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
HMGB1P09429 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
HMGB1P09429 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
HMGB1P09429 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.99■■□□□ 1.27
HMGB1P09429 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB1P09429 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 ADM-205ENST00000528544 586 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB1P09429 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGB1P09429 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.99■■□□□ 1.27
HMGB1P09429 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB1P09429 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB1P09429 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.99■■□□□ 1.27
HMGB1P09429 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.99■■□□□ 1.27
HMGB1P09429 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB1P09429 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB1P09429 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
HMGB1P09429 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.98■■□□□ 1.27
HMGB1P09429 CD99P1-205ENST00000527459 561 ntBASIC22.98■■□□□ 1.27
HMGB1P09429 AC004264.1-201ENST00000608354 794 ntBASIC22.98■■□□□ 1.27
HMGB1P09429 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB1P09429 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB1P09429 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
HMGB1P09429 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms