Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1AO00555 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.49■□□□□ 0.55
CACNA1AO00555 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.49■□□□□ 0.55
CACNA1AO00555 IGHV3-22-201ENST00000520721 359 ntBASIC18.49■□□□□ 0.55
CACNA1AO00555 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.49■□□□□ 0.55
CACNA1AO00555 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.49■□□□□ 0.55
CACNA1AO00555 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.48■□□□□ 0.55
CACNA1AO00555 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1AO00555 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.48■□□□□ 0.55
CACNA1AO00555 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.48■□□□□ 0.55
CACNA1AO00555 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CACNA1AO00555 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1AO00555 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CACNA1AO00555 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CACNA1AO00555 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.48■□□□□ 0.55
CACNA1AO00555 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CACNA1AO00555 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CACNA1AO00555 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1AO00555 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 KRT16P6-202ENST00000425692 1426 ntBASIC18.47■□□□□ 0.55
CACNA1AO00555 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
CACNA1AO00555 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CACNA1AO00555 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CACNA1AO00555 FAM197Y8-203ENST00000450145 560 ntBASIC18.47■□□□□ 0.55
CACNA1AO00555 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1AO00555 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1AO00555 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.47■□□□□ 0.55
CACNA1AO00555 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1AO00555 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1AO00555 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1AO00555 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 AC104819.1-201ENST00000504587 486 ntBASIC18.46■□□□□ 0.55
CACNA1AO00555 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1AO00555 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 AC148477.8-201ENST00000624298 468 ntBASIC18.46■□□□□ 0.55
CACNA1AO00555 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1AO00555 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1AO00555 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1AO00555 RPL13AP23-201ENST00000480739 586 ntBASIC18.46■□□□□ 0.55
CACNA1AO00555 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1AO00555 SART3-203ENST00000546611 1184 ntBASIC18.46■□□□□ 0.55
CACNA1AO00555 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CACNA1AO00555 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1AO00555 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.45■□□□□ 0.54
CACNA1AO00555 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CACNA1AO00555 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1AO00555 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.45■□□□□ 0.54
CACNA1AO00555 AF186996.4-201ENST00000467186 377 ntBASIC18.45■□□□□ 0.54
CACNA1AO00555 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1AO00555 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CACNA1AO00555 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.45■□□□□ 0.54
CACNA1AO00555 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CACNA1AO00555 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.44■□□□□ 0.54
CACNA1AO00555 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.44■□□□□ 0.54
CACNA1AO00555 MIR662-201ENST00000384847 95 ntBASIC18.44■□□□□ 0.54
CACNA1AO00555 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.44■□□□□ 0.54
CACNA1AO00555 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.44■□□□□ 0.54
CACNA1AO00555 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1AO00555 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms