Protein–RNA interactions for Protein: Q8VCB1

Ndc1, Nucleoporin NDC1, mousemouse

Known RBP Predictions only

Length 673 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1Q8VCB1 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ndc1Q8VCB1 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ndc1Q8VCB1 Particl-201ENSMUST00000205370 1560 ntBASIC22.2■■□□□ 1.14
Ndc1Q8VCB1 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ndc1Q8VCB1 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Ndc1Q8VCB1 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22.18■■□□□ 1.14
Ndc1Q8VCB1 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Ndc1Q8VCB1 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ndc1Q8VCB1 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ndc1Q8VCB1 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.17■■□□□ 1.14
Ndc1Q8VCB1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.16■■□□□ 1.14
Ndc1Q8VCB1 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.16■■□□□ 1.14
Ndc1Q8VCB1 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ndc1Q8VCB1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ndc1Q8VCB1 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ndc1Q8VCB1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC22.15■■□□□ 1.14
Ndc1Q8VCB1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ndc1Q8VCB1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ndc1Q8VCB1 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
Ndc1Q8VCB1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ndc1Q8VCB1 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.14■■□□□ 1.13
Ndc1Q8VCB1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.14■■□□□ 1.13
Ndc1Q8VCB1 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ndc1Q8VCB1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ndc1Q8VCB1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ndc1Q8VCB1 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ndc1Q8VCB1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ndc1Q8VCB1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Ndc1Q8VCB1 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ndc1Q8VCB1 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ndc1Q8VCB1 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ndc1Q8VCB1 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ndc1Q8VCB1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ndc1Q8VCB1 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
Ndc1Q8VCB1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ndc1Q8VCB1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ndc1Q8VCB1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Ndc1Q8VCB1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Ndc1Q8VCB1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Ndc1Q8VCB1 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ndc1Q8VCB1 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Ndc1Q8VCB1 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Ndc1Q8VCB1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
Ndc1Q8VCB1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ndc1Q8VCB1 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ndc1Q8VCB1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ndc1Q8VCB1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.04■■□□□ 1.12
Ndc1Q8VCB1 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ndc1Q8VCB1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ndc1Q8VCB1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
Ndc1Q8VCB1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ndc1Q8VCB1 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ndc1Q8VCB1 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ndc1Q8VCB1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ndc1Q8VCB1 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Ndc1Q8VCB1 Gm6311-201ENSMUST00000073790 878 ntBASIC22.02■■□□□ 1.12
Ndc1Q8VCB1 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ndc1Q8VCB1 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ndc1Q8VCB1 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
Ndc1Q8VCB1 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Ndc1Q8VCB1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Ndc1Q8VCB1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ndc1Q8VCB1 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ndc1Q8VCB1 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.99■■□□□ 1.11
Ndc1Q8VCB1 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ndc1Q8VCB1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Gm11175-201ENSMUST00000116172 543 ntBASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ndc1Q8VCB1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ndc1Q8VCB1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Ndc1Q8VCB1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
Ndc1Q8VCB1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ndc1Q8VCB1 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.95■■□□□ 1.1
Ndc1Q8VCB1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ndc1Q8VCB1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ndc1Q8VCB1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.94■■□□□ 1.1
Ndc1Q8VCB1 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Ndc1Q8VCB1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Ndc1Q8VCB1 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.93■■□□□ 1.1
Ndc1Q8VCB1 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ndc1Q8VCB1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.92■■□□□ 1.1
Ndc1Q8VCB1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ndc1Q8VCB1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ndc1Q8VCB1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.92■■□□□ 1.1
Ndc1Q8VCB1 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
Ndc1Q8VCB1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Ndc1Q8VCB1 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.91■■□□□ 1.1
Ndc1Q8VCB1 Mir6538-201ENSMUST00000183713 110 ntBASIC21.9■■□□□ 1.1
Ndc1Q8VCB1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ndc1Q8VCB1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
Ndc1Q8VCB1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ndc1Q8VCB1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ndc1Q8VCB1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.89■■□□□ 1.09
Ndc1Q8VCB1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Ndc1Q8VCB1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
Ndc1Q8VCB1 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Ndc1Q8VCB1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms