Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
Npc1l1Q6T3U4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Npc1l1Q6T3U4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC28.7■■■□□ 2.19
Npc1l1Q6T3U4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
Npc1l1Q6T3U4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Npc1l1Q6T3U4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Npc1l1Q6T3U4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Mir6538-201ENSMUST00000183713 110 ntBASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
Npc1l1Q6T3U4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
Npc1l1Q6T3U4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Npc1l1Q6T3U4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Npc1l1Q6T3U4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
Npc1l1Q6T3U4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Npc1l1Q6T3U4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.6■■■□□ 2.17
Npc1l1Q6T3U4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
Npc1l1Q6T3U4 Particl-201ENSMUST00000205370 1560 ntBASIC28.59■■■□□ 2.17
Npc1l1Q6T3U4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.57■■■□□ 2.16
Npc1l1Q6T3U4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Npc1l1Q6T3U4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.56■■■□□ 2.16
Npc1l1Q6T3U4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Npc1l1Q6T3U4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Npc1l1Q6T3U4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Npc1l1Q6T3U4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.54■■■□□ 2.16
Npc1l1Q6T3U4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Npc1l1Q6T3U4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Npc1l1Q6T3U4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Npc1l1Q6T3U4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.5■■■□□ 2.15
Npc1l1Q6T3U4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Npc1l1Q6T3U4 Cap2-205ENSMUST00000225824 1634 ntBASIC28.49■■■□□ 2.15
Npc1l1Q6T3U4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Gm6311-201ENSMUST00000073790 878 ntBASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.15
Npc1l1Q6T3U4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.15
Npc1l1Q6T3U4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Npc1l1Q6T3U4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Npc1l1Q6T3U4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Npc1l1Q6T3U4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Npc1l1Q6T3U4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Npc1l1Q6T3U4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Npc1l1Q6T3U4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
Npc1l1Q6T3U4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Npc1l1Q6T3U4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Npc1l1Q6T3U4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Npc1l1Q6T3U4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Npc1l1Q6T3U4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Npc1l1Q6T3U4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Npc1l1Q6T3U4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Npc1l1Q6T3U4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
Npc1l1Q6T3U4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
Npc1l1Q6T3U4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
Npc1l1Q6T3U4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Npc1l1Q6T3U4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Npc1l1Q6T3U4 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
Npc1l1Q6T3U4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Npc1l1Q6T3U4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
Npc1l1Q6T3U4 Gm37136-201ENSMUST00000194368 194 ntBASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms