Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
Npc1l1Q6T3U4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Npc1l1Q6T3U4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Npc1l1Q6T3U4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC28.7■■■□□ 2.19
Npc1l1Q6T3U4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
Npc1l1Q6T3U4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Npc1l1Q6T3U4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28.69■■■□□ 2.18
Npc1l1Q6T3U4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Npc1l1Q6T3U4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Mir6538-201ENSMUST00000183713 110 ntBASIC28.66■■■□□ 2.18
Npc1l1Q6T3U4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
Npc1l1Q6T3U4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
Npc1l1Q6T3U4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Npc1l1Q6T3U4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Npc1l1Q6T3U4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Npc1l1Q6T3U4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
Npc1l1Q6T3U4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Npc1l1Q6T3U4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.6■■■□□ 2.17
Npc1l1Q6T3U4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
Npc1l1Q6T3U4 Particl-201ENSMUST00000205370 1560 ntBASIC28.59■■■□□ 2.17
Npc1l1Q6T3U4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.57■■■□□ 2.16
Npc1l1Q6T3U4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Npc1l1Q6T3U4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.56■■■□□ 2.16
Npc1l1Q6T3U4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Npc1l1Q6T3U4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Npc1l1Q6T3U4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Npc1l1Q6T3U4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.54■■■□□ 2.16
Npc1l1Q6T3U4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Npc1l1Q6T3U4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Npc1l1Q6T3U4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Npc1l1Q6T3U4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.5■■■□□ 2.15
Npc1l1Q6T3U4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Npc1l1Q6T3U4 Cap2-205ENSMUST00000225824 1634 ntBASIC28.49■■■□□ 2.15
Npc1l1Q6T3U4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Gm6311-201ENSMUST00000073790 878 ntBASIC28.47■■■□□ 2.15
Npc1l1Q6T3U4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.15
Npc1l1Q6T3U4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.15
Npc1l1Q6T3U4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Npc1l1Q6T3U4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
Npc1l1Q6T3U4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC28.43■■■□□ 2.14
Npc1l1Q6T3U4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Npc1l1Q6T3U4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Npc1l1Q6T3U4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Npc1l1Q6T3U4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Npc1l1Q6T3U4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Npc1l1Q6T3U4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
Npc1l1Q6T3U4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Npc1l1Q6T3U4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Npc1l1Q6T3U4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28.38■■■□□ 2.13
Npc1l1Q6T3U4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Npc1l1Q6T3U4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Npc1l1Q6T3U4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Npc1l1Q6T3U4 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Npc1l1Q6T3U4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Npc1l1Q6T3U4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Npc1l1Q6T3U4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
Npc1l1Q6T3U4 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
Npc1l1Q6T3U4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
Npc1l1Q6T3U4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
Npc1l1Q6T3U4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Npc1l1Q6T3U4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Npc1l1Q6T3U4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Npc1l1Q6T3U4 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Npc1l1Q6T3U4 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
Npc1l1Q6T3U4 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Npc1l1Q6T3U4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
Npc1l1Q6T3U4 Gm37136-201ENSMUST00000194368 194 ntBASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
Npc1l1Q6T3U4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms