Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Snrnp40Q6PE01 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.25■□□□□ 0.99
Snrnp40Q6PE01 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.25■□□□□ 0.99
Snrnp40Q6PE01 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Snrnp40Q6PE01 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Snrnp40Q6PE01 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Snrnp40Q6PE01 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Snrnp40Q6PE01 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Snrnp40Q6PE01 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Mir3960-201ENSMUST00000198213 73 ntBASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Snrnp40Q6PE01 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Snrnp40Q6PE01 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Snrnp40Q6PE01 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Snrnp40Q6PE01 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Snrnp40Q6PE01 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Snrnp40Q6PE01 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.18■□□□□ 0.98
Snrnp40Q6PE01 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
Snrnp40Q6PE01 Gm45364-201ENSMUST00000210883 159 ntBASIC21.17■□□□□ 0.98
Snrnp40Q6PE01 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Snrnp40Q6PE01 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Snrnp40Q6PE01 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Snrnp40Q6PE01 Gm7332-201ENSMUST00000118351 454 ntBASIC21.16■□□□□ 0.98
Snrnp40Q6PE01 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Snrnp40Q6PE01 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Snrnp40Q6PE01 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Snrnp40Q6PE01 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Snrnp40Q6PE01 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Snrnp40Q6PE01 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.14■□□□□ 0.97
Snrnp40Q6PE01 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Snrnp40Q6PE01 Gm27502-201ENSMUST00000183495 199 ntBASIC21.14■□□□□ 0.97
Snrnp40Q6PE01 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.14■□□□□ 0.97
Snrnp40Q6PE01 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Snrnp40Q6PE01 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.13■□□□□ 0.97
Snrnp40Q6PE01 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Snrnp40Q6PE01 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Snrnp40Q6PE01 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.12■□□□□ 0.97
Snrnp40Q6PE01 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.12■□□□□ 0.97
Snrnp40Q6PE01 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.12■□□□□ 0.97
Snrnp40Q6PE01 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Snrnp40Q6PE01 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Snrnp40Q6PE01 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Snrnp40Q6PE01 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Snrnp40Q6PE01 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Snrnp40Q6PE01 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
Snrnp40Q6PE01 Gm37136-201ENSMUST00000194368 194 ntBASIC21.1■□□□□ 0.97
Snrnp40Q6PE01 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Snrnp40Q6PE01 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Snrnp40Q6PE01 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Snrnp40Q6PE01 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.07■□□□□ 0.96
Snrnp40Q6PE01 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Snrnp40Q6PE01 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.07■□□□□ 0.96
Snrnp40Q6PE01 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Snrnp40Q6PE01 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Snrnp40Q6PE01 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Snrnp40Q6PE01 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.06■□□□□ 0.96
Snrnp40Q6PE01 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Snrnp40Q6PE01 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Snrnp40Q6PE01 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Snrnp40Q6PE01 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Snrnp40Q6PE01 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Snrnp40Q6PE01 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.04■□□□□ 0.96
Snrnp40Q6PE01 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Snrnp40Q6PE01 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Snrnp40Q6PE01 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.04■□□□□ 0.96
Snrnp40Q6PE01 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Snrnp40Q6PE01 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Snrnp40Q6PE01 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Snrnp40Q6PE01 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Snrnp40Q6PE01 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Snrnp40Q6PE01 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Snrnp40Q6PE01 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21■□□□□ 0.95
Snrnp40Q6PE01 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21■□□□□ 0.95
Snrnp40Q6PE01 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Snrnp40Q6PE01 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21■□□□□ 0.95
Snrnp40Q6PE01 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Snrnp40Q6PE01 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Snrnp40Q6PE01 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Snrnp40Q6PE01 Gm14523-201ENSMUST00000117260 558 ntBASIC20.98■□□□□ 0.95
Snrnp40Q6PE01 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.97■□□□□ 0.95
Snrnp40Q6PE01 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Snrnp40Q6PE01 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Snrnp40Q6PE01 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Snrnp40Q6PE01 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Snrnp40Q6PE01 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Snrnp40Q6PE01 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.94■□□□□ 0.94
Snrnp40Q6PE01 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms