Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Shkbp1Q6P7W2 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.07■■□□□ 1.6
Shkbp1Q6P7W2 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Shkbp1Q6P7W2 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Shkbp1Q6P7W2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Shkbp1Q6P7W2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Shkbp1Q6P7W2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Shkbp1Q6P7W2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC25.04■■□□□ 1.6
Shkbp1Q6P7W2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Shkbp1Q6P7W2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Shkbp1Q6P7W2 Cap2-205ENSMUST00000225824 1634 ntBASIC25.04■■□□□ 1.6
Shkbp1Q6P7W2 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shkbp1Q6P7W2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.03■■□□□ 1.6
Shkbp1Q6P7W2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shkbp1Q6P7W2 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Shkbp1Q6P7W2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Shkbp1Q6P7W2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Shkbp1Q6P7W2 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Shkbp1Q6P7W2 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Shkbp1Q6P7W2 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
Shkbp1Q6P7W2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
Shkbp1Q6P7W2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Shkbp1Q6P7W2 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Shkbp1Q6P7W2 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Shkbp1Q6P7W2 Gm37136-201ENSMUST00000194368 194 ntBASIC24.97■■□□□ 1.59
Shkbp1Q6P7W2 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Shkbp1Q6P7W2 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC24.96■■□□□ 1.59
Shkbp1Q6P7W2 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
Shkbp1Q6P7W2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Shkbp1Q6P7W2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC24.95■■□□□ 1.59
Shkbp1Q6P7W2 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Shkbp1Q6P7W2 Gm4799-201ENSMUST00000095396 657 ntBASIC24.95■■□□□ 1.58
Shkbp1Q6P7W2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC24.95■■□□□ 1.58
Shkbp1Q6P7W2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Shkbp1Q6P7W2 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Shkbp1Q6P7W2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Shkbp1Q6P7W2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Shkbp1Q6P7W2 Scarna2-201ENSMUST00000157560 414 ntBASIC24.93■■□□□ 1.58
Shkbp1Q6P7W2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
Shkbp1Q6P7W2 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC24.92■■□□□ 1.58
Shkbp1Q6P7W2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC24.92■■□□□ 1.58
Shkbp1Q6P7W2 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.91■■□□□ 1.58
Shkbp1Q6P7W2 AC154454.1-201ENSMUST00000225253 216 ntBASIC24.91■■□□□ 1.58
Shkbp1Q6P7W2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC24.91■■□□□ 1.58
Shkbp1Q6P7W2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Shkbp1Q6P7W2 Mir3960-201ENSMUST00000198213 73 ntBASIC24.9■■□□□ 1.58
Shkbp1Q6P7W2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Shkbp1Q6P7W2 Pkd1-207ENSMUST00000228550 1050 ntBASIC24.89■■□□□ 1.58
Shkbp1Q6P7W2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Shkbp1Q6P7W2 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Shkbp1Q6P7W2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Shkbp1Q6P7W2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.89■■□□□ 1.57
Shkbp1Q6P7W2 Gm45364-201ENSMUST00000210883 159 ntBASIC24.88■■□□□ 1.57
Shkbp1Q6P7W2 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
Shkbp1Q6P7W2 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Shkbp1Q6P7W2 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Shkbp1Q6P7W2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.87■■□□□ 1.57
Shkbp1Q6P7W2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
Shkbp1Q6P7W2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Shkbp1Q6P7W2 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.86■■□□□ 1.57
Shkbp1Q6P7W2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Shkbp1Q6P7W2 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Shkbp1Q6P7W2 Gm9806-201ENSMUST00000051080 552 ntBASIC24.86■■□□□ 1.57
Shkbp1Q6P7W2 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Shkbp1Q6P7W2 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Shkbp1Q6P7W2 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Shkbp1Q6P7W2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Shkbp1Q6P7W2 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Shkbp1Q6P7W2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Shkbp1Q6P7W2 Gm11687-201ENSMUST00000118911 886 ntBASIC24.83■■□□□ 1.57
Shkbp1Q6P7W2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC24.83■■□□□ 1.57
Shkbp1Q6P7W2 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Shkbp1Q6P7W2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
Shkbp1Q6P7W2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC24.82■■□□□ 1.56
Shkbp1Q6P7W2 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Shkbp1Q6P7W2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Shkbp1Q6P7W2 Gm16437-201ENSMUST00000025669 507 ntBASIC24.81■■□□□ 1.56
Shkbp1Q6P7W2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
Shkbp1Q6P7W2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Shkbp1Q6P7W2 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.8■■□□□ 1.56
Shkbp1Q6P7W2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Shkbp1Q6P7W2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
Shkbp1Q6P7W2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Shkbp1Q6P7W2 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Shkbp1Q6P7W2 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
Shkbp1Q6P7W2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Shkbp1Q6P7W2 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Shkbp1Q6P7W2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Shkbp1Q6P7W2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Shkbp1Q6P7W2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC24.75■■□□□ 1.55
Shkbp1Q6P7W2 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC24.74■■□□□ 1.55
Shkbp1Q6P7W2 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
Shkbp1Q6P7W2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC24.73■■□□□ 1.55
Shkbp1Q6P7W2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Shkbp1Q6P7W2 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.72■■□□□ 1.55
Shkbp1Q6P7W2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Shkbp1Q6P7W2 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Shkbp1Q6P7W2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.71■■□□□ 1.55
Shkbp1Q6P7W2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Shkbp1Q6P7W2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.71■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms