Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Gm25239-201ENSMUST00000174915 86 ntBASIC41.15■■■■■ 4.18
Shkbp1Q6P7W2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
Shkbp1Q6P7W2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
Shkbp1Q6P7W2 Gm15042-201ENSMUST00000120212 883 ntBASIC35.89■■■■□ 3.34
Shkbp1Q6P7W2 Gm24109-201ENSMUST00000175489 103 ntBASIC35.71■■■■□ 3.31
Shkbp1Q6P7W2 Gm15045-201ENSMUST00000117359 883 ntBASIC35.11■■■■□ 3.21
Shkbp1Q6P7W2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
Shkbp1Q6P7W2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Shkbp1Q6P7W2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.75■■■■□ 3.15
Shkbp1Q6P7W2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
Shkbp1Q6P7W2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
Shkbp1Q6P7W2 Gm23366-201ENSMUST00000175022 89 ntBASIC34.34■■■■□ 3.09
Shkbp1Q6P7W2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
Shkbp1Q6P7W2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.83■■■■□ 3.01
Shkbp1Q6P7W2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Shkbp1Q6P7W2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.31■■■□□ 2.92
Shkbp1Q6P7W2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Shkbp1Q6P7W2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
Shkbp1Q6P7W2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.09■■■□□ 2.89
Shkbp1Q6P7W2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.05■■■□□ 2.88
Shkbp1Q6P7W2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
Shkbp1Q6P7W2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.94■■■□□ 2.86
Shkbp1Q6P7W2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Shkbp1Q6P7W2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Shkbp1Q6P7W2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Shkbp1Q6P7W2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Shkbp1Q6P7W2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
Shkbp1Q6P7W2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
Shkbp1Q6P7W2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Shkbp1Q6P7W2 Gm25238-201ENSMUST00000174914 89 ntBASIC32.52■■■□□ 2.8
Shkbp1Q6P7W2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.46■■■□□ 2.79
Shkbp1Q6P7W2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Shkbp1Q6P7W2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Shkbp1Q6P7W2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.39■■■□□ 2.78
Shkbp1Q6P7W2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
Shkbp1Q6P7W2 Psd-208ENSMUST00000224556 2034 ntBASIC32.11■■■□□ 2.73
Shkbp1Q6P7W2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
Shkbp1Q6P7W2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.85■■■□□ 2.69
Shkbp1Q6P7W2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.75■■■□□ 2.67
Shkbp1Q6P7W2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Shkbp1Q6P7W2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.66■■■□□ 2.66
Shkbp1Q6P7W2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Shkbp1Q6P7W2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.46■■■□□ 2.63
Shkbp1Q6P7W2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
Shkbp1Q6P7W2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.62
Shkbp1Q6P7W2 Gm27325-201ENSMUST00000175467 74 ntBASIC31.44■■■□□ 2.62
Shkbp1Q6P7W2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Shkbp1Q6P7W2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Shkbp1Q6P7W2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.27■■■□□ 2.6
Shkbp1Q6P7W2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shkbp1Q6P7W2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.14■■■□□ 2.58
Shkbp1Q6P7W2 Gm25262-201ENSMUST00000174934 133 ntBASIC31.14■■■□□ 2.58
Shkbp1Q6P7W2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Shkbp1Q6P7W2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Shkbp1Q6P7W2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.97■■■□□ 2.55
Shkbp1Q6P7W2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.95■■■□□ 2.54
Shkbp1Q6P7W2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Shkbp1Q6P7W2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Shkbp1Q6P7W2 Rab21-202ENSMUST00000218831 843 ntBASIC30.9■■■□□ 2.54
Shkbp1Q6P7W2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.81■■■□□ 2.52
Shkbp1Q6P7W2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Shkbp1Q6P7W2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Shkbp1Q6P7W2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Shkbp1Q6P7W2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.64■■■□□ 2.5
Shkbp1Q6P7W2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.62■■■□□ 2.49
Shkbp1Q6P7W2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Shkbp1Q6P7W2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
Shkbp1Q6P7W2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
Shkbp1Q6P7W2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.55■■■□□ 2.48
Shkbp1Q6P7W2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.54■■■□□ 2.48
Shkbp1Q6P7W2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Shkbp1Q6P7W2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.52■■■□□ 2.48
Shkbp1Q6P7W2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Shkbp1Q6P7W2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Shkbp1Q6P7W2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Shkbp1Q6P7W2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Shkbp1Q6P7W2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Shkbp1Q6P7W2 Gm26115-201ENSMUST00000175605 87 ntBASIC30.38■■■□□ 2.45
Shkbp1Q6P7W2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Shkbp1Q6P7W2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Shkbp1Q6P7W2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Shkbp1Q6P7W2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Shkbp1Q6P7W2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Shkbp1Q6P7W2 Gm8109-201ENSMUST00000194076 746 ntBASIC30.24■■■□□ 2.43
Shkbp1Q6P7W2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Shkbp1Q6P7W2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Shkbp1Q6P7W2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.42
Shkbp1Q6P7W2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Shkbp1Q6P7W2 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.17■■■□□ 2.42
Shkbp1Q6P7W2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.15■■■□□ 2.42
Shkbp1Q6P7W2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Shkbp1Q6P7W2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.12■■■□□ 2.41
Shkbp1Q6P7W2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Shkbp1Q6P7W2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Shkbp1Q6P7W2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.04■■■□□ 2.4
Shkbp1Q6P7W2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.96■■■□□ 2.39
Shkbp1Q6P7W2 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.96■■■□□ 2.39
Shkbp1Q6P7W2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.94■■■□□ 2.38
Shkbp1Q6P7W2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.93■■■□□ 2.38
Shkbp1Q6P7W2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms