Protein–RNA interactions for Protein: Q6H1V1

Best3, Bestrophin-3, mousemouse

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Best3Q6H1V1 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Best3Q6H1V1 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Best3Q6H1V1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Best3Q6H1V1 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Best3Q6H1V1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Best3Q6H1V1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.85■■■□□ 2.21
Best3Q6H1V1 Gm37136-201ENSMUST00000194368 194 ntBASIC28.85■■■□□ 2.21
Best3Q6H1V1 Gm9806-201ENSMUST00000051080 552 ntBASIC28.85■■■□□ 2.21
Best3Q6H1V1 Pkd1-207ENSMUST00000228550 1050 ntBASIC28.84■■■□□ 2.21
Best3Q6H1V1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Best3Q6H1V1 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC28.83■■■□□ 2.21
Best3Q6H1V1 Gm4799-201ENSMUST00000095396 657 ntBASIC28.83■■■□□ 2.21
Best3Q6H1V1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
Best3Q6H1V1 Gm9905-201ENSMUST00000065740 1845 ntBASIC28.83■■■□□ 2.21
Best3Q6H1V1 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC28.82■■■□□ 2.2
Best3Q6H1V1 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC28.82■■■□□ 2.2
Best3Q6H1V1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Best3Q6H1V1 Gm11687-201ENSMUST00000118911 886 ntBASIC28.81■■■□□ 2.2
Best3Q6H1V1 Mir3960-201ENSMUST00000198213 73 ntBASIC28.81■■■□□ 2.2
Best3Q6H1V1 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
Best3Q6H1V1 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Best3Q6H1V1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Best3Q6H1V1 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Best3Q6H1V1 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC28.79■■■□□ 2.2
Best3Q6H1V1 Gm12366-201ENSMUST00000121722 873 ntBASIC28.79■■■□□ 2.2
Best3Q6H1V1 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC28.79■■■□□ 2.2
Best3Q6H1V1 Gm45364-201ENSMUST00000210883 159 ntBASIC28.79■■■□□ 2.2
Best3Q6H1V1 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC28.79■■■□□ 2.2
Best3Q6H1V1 Gm5786-201ENSMUST00000085368 882 ntBASIC28.79■■■□□ 2.2
Best3Q6H1V1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Best3Q6H1V1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC28.79■■■□□ 2.2
Best3Q6H1V1 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Best3Q6H1V1 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Best3Q6H1V1 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Best3Q6H1V1 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Best3Q6H1V1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC28.77■■■□□ 2.2
Best3Q6H1V1 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.76■■■□□ 2.19
Best3Q6H1V1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Best3Q6H1V1 Gm16437-201ENSMUST00000025669 507 ntBASIC28.75■■■□□ 2.19
Best3Q6H1V1 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Best3Q6H1V1 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
Best3Q6H1V1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC28.74■■■□□ 2.19
Best3Q6H1V1 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC28.73■■■□□ 2.19
Best3Q6H1V1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC28.71■■■□□ 2.19
Best3Q6H1V1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Best3Q6H1V1 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.19
Best3Q6H1V1 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Best3Q6H1V1 Gm13889-201ENSMUST00000099689 1386 ntBASIC28.69■■■□□ 2.18
Best3Q6H1V1 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Best3Q6H1V1 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Best3Q6H1V1 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Best3Q6H1V1 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Best3Q6H1V1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
Best3Q6H1V1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
Best3Q6H1V1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Best3Q6H1V1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
Best3Q6H1V1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
Best3Q6H1V1 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Best3Q6H1V1 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Best3Q6H1V1 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC28.63■■■□□ 2.17
Best3Q6H1V1 Gm12818-201ENSMUST00000117562 1349 ntBASIC28.63■■■□□ 2.17
Best3Q6H1V1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Best3Q6H1V1 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Best3Q6H1V1 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Best3Q6H1V1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC28.59■■■□□ 2.17
Best3Q6H1V1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
Best3Q6H1V1 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
Best3Q6H1V1 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Best3Q6H1V1 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Best3Q6H1V1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Best3Q6H1V1 Zxda-201ENSMUST00000117281 2621 ntBASIC28.56■■■□□ 2.16
Best3Q6H1V1 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Best3Q6H1V1 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Best3Q6H1V1 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
Best3Q6H1V1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
Best3Q6H1V1 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC28.54■■■□□ 2.16
Best3Q6H1V1 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC28.54■■■□□ 2.16
Best3Q6H1V1 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
Best3Q6H1V1 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC28.53■■■□□ 2.16
Best3Q6H1V1 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC28.53■■■□□ 2.16
Best3Q6H1V1 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC28.52■■■□□ 2.16
Best3Q6H1V1 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Best3Q6H1V1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.51■■■□□ 2.15
Best3Q6H1V1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Best3Q6H1V1 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Best3Q6H1V1 Gm27502-201ENSMUST00000183495 199 ntBASIC28.51■■■□□ 2.15
Best3Q6H1V1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC28.5■■■□□ 2.15
Best3Q6H1V1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms