Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.47■□□□□ 0.87
Nkx3-1P97436 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx3-1P97436 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx3-1P97436 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx3-1P97436 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.46■□□□□ 0.87
Nkx3-1P97436 Scarna2-201ENSMUST00000157560 414 ntBASIC20.45■□□□□ 0.86
Nkx3-1P97436 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.45■□□□□ 0.86
Nkx3-1P97436 Gm4799-201ENSMUST00000095396 657 ntBASIC20.45■□□□□ 0.86
Nkx3-1P97436 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx3-1P97436 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.44■□□□□ 0.86
Nkx3-1P97436 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx3-1P97436 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx3-1P97436 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx3-1P97436 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx3-1P97436 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nkx3-1P97436 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nkx3-1P97436 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Nkx3-1P97436 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nkx3-1P97436 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nkx3-1P97436 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.41■□□□□ 0.86
Nkx3-1P97436 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Nkx3-1P97436 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Nkx3-1P97436 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.4■□□□□ 0.86
Nkx3-1P97436 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nkx3-1P97436 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.39■□□□□ 0.86
Nkx3-1P97436 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.39■□□□□ 0.86
Nkx3-1P97436 Gm11687-201ENSMUST00000118911 886 ntBASIC20.39■□□□□ 0.85
Nkx3-1P97436 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.39■□□□□ 0.85
Nkx3-1P97436 Gm9806-201ENSMUST00000051080 552 ntBASIC20.39■□□□□ 0.85
Nkx3-1P97436 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.38■□□□□ 0.85
Nkx3-1P97436 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.38■□□□□ 0.85
Nkx3-1P97436 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx3-1P97436 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx3-1P97436 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx3-1P97436 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC20.37■□□□□ 0.85
Nkx3-1P97436 Mir3960-201ENSMUST00000198213 73 ntBASIC20.37■□□□□ 0.85
Nkx3-1P97436 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.37■□□□□ 0.85
Nkx3-1P97436 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Nkx3-1P97436 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nkx3-1P97436 Zxda-201ENSMUST00000117281 2621 ntBASIC20.36■□□□□ 0.85
Nkx3-1P97436 Gm16437-201ENSMUST00000025669 507 ntBASIC20.36■□□□□ 0.85
Nkx3-1P97436 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nkx3-1P97436 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nkx3-1P97436 Gm37136-201ENSMUST00000194368 194 ntBASIC20.34■□□□□ 0.85
Nkx3-1P97436 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nkx3-1P97436 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.34■□□□□ 0.85
Nkx3-1P97436 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nkx3-1P97436 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nkx3-1P97436 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.33■□□□□ 0.85
Nkx3-1P97436 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx3-1P97436 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx3-1P97436 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx3-1P97436 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx3-1P97436 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.32■□□□□ 0.84
Nkx3-1P97436 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Nkx3-1P97436 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx3-1P97436 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx3-1P97436 Gm45364-201ENSMUST00000210883 159 ntBASIC20.3■□□□□ 0.84
Nkx3-1P97436 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx3-1P97436 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx3-1P97436 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx3-1P97436 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Nkx3-1P97436 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx3-1P97436 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Nkx3-1P97436 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Nkx3-1P97436 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.27■□□□□ 0.84
Nkx3-1P97436 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nkx3-1P97436 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Nkx3-1P97436 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx3-1P97436 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.26■□□□□ 0.83
Nkx3-1P97436 Gm12366-201ENSMUST00000121722 873 ntBASIC20.26■□□□□ 0.83
Nkx3-1P97436 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.26■□□□□ 0.83
Nkx3-1P97436 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.26■□□□□ 0.83
Nkx3-1P97436 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx3-1P97436 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx3-1P97436 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.26■□□□□ 0.83
Nkx3-1P97436 Gm5786-201ENSMUST00000085368 882 ntBASIC20.26■□□□□ 0.83
Nkx3-1P97436 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx3-1P97436 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx3-1P97436 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.25■□□□□ 0.83
Nkx3-1P97436 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx3-1P97436 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx3-1P97436 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.25■□□□□ 0.83
Nkx3-1P97436 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx3-1P97436 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx3-1P97436 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx3-1P97436 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.23■□□□□ 0.83
Nkx3-1P97436 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms