Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC26.48■■□□□ 1.83
HttP42859 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
HttP42859 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
HttP42859 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.48■■□□□ 1.83
HttP42859 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HttP42859 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.47■■□□□ 1.83
HttP42859 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
HttP42859 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.45■■□□□ 1.82
HttP42859 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HttP42859 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
HttP42859 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HttP42859 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HttP42859 Gm30023-201ENSMUST00000197970 889 ntBASIC26.44■■□□□ 1.82
HttP42859 Gm5921-201ENSMUST00000075898 882 ntBASIC26.44■■□□□ 1.82
HttP42859 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HttP42859 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HttP42859 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HttP42859 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HttP42859 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC26.43■■□□□ 1.82
HttP42859 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HttP42859 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HttP42859 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HttP42859 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC26.42■■□□□ 1.82
HttP42859 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
HttP42859 Gm15546-201ENSMUST00000122095 826 ntBASIC26.41■■□□□ 1.82
HttP42859 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
HttP42859 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HttP42859 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
HttP42859 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
HttP42859 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
HttP42859 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
HttP42859 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.37■■□□□ 1.81
HttP42859 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC26.37■■□□□ 1.81
HttP42859 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
HttP42859 Gm5067-201ENSMUST00000170449 1009 ntBASIC26.36■■□□□ 1.81
HttP42859 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HttP42859 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HttP42859 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HttP42859 AC151971.4-201ENSMUST00000214717 704 ntBASIC26.33■■□□□ 1.81
HttP42859 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
HttP42859 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC26.32■■□□□ 1.8
HttP42859 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC26.32■■□□□ 1.8
HttP42859 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HttP42859 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
HttP42859 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
HttP42859 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HttP42859 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
HttP42859 Gm5522-201ENSMUST00000189483 1242 ntBASIC26.3■■□□□ 1.8
HttP42859 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HttP42859 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
HttP42859 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
HttP42859 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
HttP42859 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HttP42859 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HttP42859 Gm10420-201ENSMUST00000121713 882 ntBASIC26.28■■□□□ 1.8
HttP42859 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HttP42859 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HttP42859 AC093043.1-201ENSMUST00000226700 898 ntBASIC26.27■■□□□ 1.8
HttP42859 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
HttP42859 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
HttP42859 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HttP42859 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HttP42859 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HttP42859 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HttP42859 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HttP42859 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.23■■□□□ 1.79
HttP42859 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HttP42859 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC26.23■■□□□ 1.79
HttP42859 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HttP42859 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HttP42859 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC26.22■■□□□ 1.79
HttP42859 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
HttP42859 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HttP42859 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
HttP42859 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.78
HttP42859 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC26.19■■□□□ 1.78
HttP42859 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.18■■□□□ 1.78
HttP42859 Mir3960-201ENSMUST00000198213 73 ntBASIC26.18■■□□□ 1.78
HttP42859 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC26.18■■□□□ 1.78
HttP42859 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HttP42859 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
HttP42859 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HttP42859 Gm12818-201ENSMUST00000117562 1349 ntBASIC26.16■■□□□ 1.78
HttP42859 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
HttP42859 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
HttP42859 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
HttP42859 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC26.15■■□□□ 1.78
HttP42859 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HttP42859 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.15■■□□□ 1.78
HttP42859 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HttP42859 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
HttP42859 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HttP42859 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HttP42859 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HttP42859 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC26.13■■□□□ 1.77
HttP42859 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HttP42859 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HttP42859 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HttP42859 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
HttP42859 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 455.9 ms