Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rom1P32958 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rom1P32958 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rom1P32958 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rom1P32958 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
Rom1P32958 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Rom1P32958 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rom1P32958 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rom1P32958 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rom1P32958 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Rom1P32958 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.61■□□□□ 0.57
Rom1P32958 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rom1P32958 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.6■□□□□ 0.57
Rom1P32958 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
Rom1P32958 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rom1P32958 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rom1P32958 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rom1P32958 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rom1P32958 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Rom1P32958 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Rom1P32958 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Rom1P32958 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rom1P32958 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rom1P32958 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rom1P32958 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Rom1P32958 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
Rom1P32958 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rom1P32958 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rom1P32958 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rom1P32958 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rom1P32958 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Rom1P32958 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rom1P32958 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Rom1P32958 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rom1P32958 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rom1P32958 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Rom1P32958 Gm26115-201ENSMUST00000175605 87 ntBASIC18.53■□□□□ 0.56
Rom1P32958 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rom1P32958 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rom1P32958 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Rom1P32958 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Rom1P32958 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Rom1P32958 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Rom1P32958 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.52■□□□□ 0.56
Rom1P32958 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Rom1P32958 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Rom1P32958 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Rom1P32958 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rom1P32958 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.5■□□□□ 0.55
Rom1P32958 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rom1P32958 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Rom1P32958 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Rom1P32958 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rom1P32958 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.49■□□□□ 0.55
Rom1P32958 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rom1P32958 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rom1P32958 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rom1P32958 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Rom1P32958 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Rom1P32958 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rom1P32958 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Rom1P32958 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Rom1P32958 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rom1P32958 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rom1P32958 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rom1P32958 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rom1P32958 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Rom1P32958 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Rom1P32958 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Rom1P32958 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rom1P32958 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rom1P32958 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rom1P32958 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rom1P32958 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rom1P32958 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Rom1P32958 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rom1P32958 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rom1P32958 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rom1P32958 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.39■□□□□ 0.53
Rom1P32958 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rom1P32958 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rom1P32958 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rom1P32958 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Rom1P32958 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rom1P32958 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rom1P32958 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 135.3 ms