Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.93□□□□□ -1.46
USP39Q53GS9 GNG5P2-201ENST00000372054 207 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 RNU6-481P-201ENST00000384194 107 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 SLC9B1P2-201ENST00000398120 1184 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AL391422.1-201ENST00000402155 436 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 SETP15-201ENST00000412724 337 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.93□□□□□ -1.46
USP39Q53GS9 MRPL53P1-201ENST00000414323 319 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AL022331.1-201ENST00000429025 477 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 Z99127.2-201ENST00000441426 334 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 RPS7P3-201ENST00000443360 580 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 RN7SL184P-201ENST00000488308 297 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 OR7E157P-201ENST00000494376 911 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC080014.1-201ENST00000496877 1201 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.93□□□□□ -1.46
USP39Q53GS9 OR5M14P-201ENST00000506803 618 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC092593.2-201ENST00000513866 913 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 RNU6-615P-201ENST00000516065 106 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC079064.1-201ENST00000528365 362 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC027026.1-201ENST00000532323 742 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 NOP56P3-201ENST00000549457 385 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC044860.2-201ENST00000561005 179 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 AC095057.3-201ENST00000567102 1157 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 DHFRP1-201ENST00000579682 559 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC005771.1-201ENST00000585581 349 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC079880.2-201ENST00000603790 1213 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 Z69908.1-201ENST00000622603 247 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
USP39Q53GS9 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
USP39Q53GS9 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 AP001284.1-201ENST00000528393 2118 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
USP39Q53GS9 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 AL390237.1-201ENST00000404226 1415 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC092104.1-201ENST00000497346 1441 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC073429.2-201ENST00000569694 1444 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 SNORA58B-201ENST00000364259 136 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC5.92□□□□□ -1.46
USP39Q53GS9 RNU6-517P-201ENST00000384362 110 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
USP39Q53GS9 RN7SKP59-201ENST00000410520 314 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 RPS3AP37-201ENST00000419176 745 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 RPS27P18-201ENST00000431701 247 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 CFL1P1-202ENST00000432948 411 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AL929288.2-201ENST00000446368 407 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC128716.1-201ENST00000475129 166 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 RPL32P9-201ENST00000487963 407 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 HMGB1P47-201ENST00000511281 589 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.92□□□□□ -1.46
USP39Q53GS9 HMGB1P42-201ENST00000532126 553 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AGGF1P4-201ENST00000568249 801 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms