Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC073869.6-201ENST00000640656 341 ntBASIC5.66□□□□□ -1.5
MSX2P35548 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 ZNF833P-201ENST00000424938 1494 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC024651.2-201ENST00000562480 2098 ntBASIC5.65□□□□□ -1.5
MSX2P35548 BCORP1-203ENST00000513194 5093 ntBASIC5.65□□□□□ -1.5
MSX2P35548 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.65□□□□□ -1.5
MSX2P35548 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
MSX2P35548 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 OR10R3P-201ENST00000361688 942 ntBASIC5.65□□□□□ -1.5
MSX2P35548 RNU6-1283P-201ENST00000365314 105 ntBASIC5.65□□□□□ -1.5
MSX2P35548 SNORA26.8-201ENST00000391306 124 ntBASIC5.65□□□□□ -1.5
MSX2P35548 DNAJC19P6-201ENST00000401853 280 ntBASIC5.65□□□□□ -1.5
MSX2P35548 MTND4LP20-201ENST00000402379 270 ntBASIC5.65□□□□□ -1.5
MSX2P35548 SNORA11.5-201ENST00000408163 128 ntBASIC5.65□□□□□ -1.5
MSX2P35548 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 RNU6-757P-201ENST00000410334 100 ntBASIC5.65□□□□□ -1.5
MSX2P35548 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 MYL6P5-201ENST00000412707 459 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC105402.1-201ENST00000413336 545 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 MTCO2P34-201ENST00000421994 607 ntBASIC5.65□□□□□ -1.5
MSX2P35548 RPL7AP14-201ENST00000424041 802 ntBASIC5.65□□□□□ -1.5
MSX2P35548 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.65□□□□□ -1.5
MSX2P35548 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.65□□□□□ -1.5
MSX2P35548 AC242426.1-201ENST00000435270 960 ntBASIC5.65□□□□□ -1.5
MSX2P35548 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 Z74696.2-201ENST00000436514 498 ntBASIC5.65□□□□□ -1.5
MSX2P35548 EMC3-AS1-205ENST00000438698 534 ntBASIC5.65□□□□□ -1.5
MSX2P35548 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 RBMY2TP-201ENST00000451162 947 ntBASIC5.65□□□□□ -1.5
MSX2P35548 OR52E3P-201ENST00000452083 936 ntBASIC5.65□□□□□ -1.5
MSX2P35548 RPS20P4-201ENST00000461659 355 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AL603882.1-201ENST00000463059 681 ntBASIC5.65□□□□□ -1.5
MSX2P35548 CCDC75P1-201ENST00000469247 791 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC5.65□□□□□ -1.5
MSX2P35548 RN7SL413P-201ENST00000482700 297 ntBASIC5.65□□□□□ -1.5
MSX2P35548 RN7SL655P-201ENST00000486087 298 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC104685.1-201ENST00000502445 371 ntBASIC5.65□□□□□ -1.5
MSX2P35548 ARL4AP1-201ENST00000503220 705 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC025459.1-201ENST00000504072 156 ntBASIC5.65□□□□□ -1.5
MSX2P35548 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 AC104090.1-201ENST00000506341 1171 ntBASIC5.65□□□□□ -1.5
MSX2P35548 RN7SKP141-201ENST00000516167 338 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC130366.1-201ENST00000526505 1192 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AP002963.1-201ENST00000530590 184 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 CCNG2P1-201ENST00000549521 1000 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.65□□□□□ -1.5
MSX2P35548 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.65□□□□□ -1.5
MSX2P35548 AL512347.1-201ENST00000566420 503 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX2P35548 ISCA1P3-201ENST00000577104 373 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC107982.3-201ENST00000584957 985 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC119403.2-201ENST00000590960 598 ntBASIC5.65□□□□□ -1.5
MSX2P35548 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 MTCO2P22-201ENST00000603246 681 ntBASIC5.65□□□□□ -1.5
MSX2P35548 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX2P35548 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 AL589743.6-201ENST00000611025 117 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AL592148.2-201ENST00000612210 372 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AC009509.4-201ENST00000619202 509 ntBASIC5.65□□□□□ -1.5
MSX2P35548 AL356121.2-201ENST00000624715 780 ntBASIC5.65□□□□□ -1.5
MSX2P35548 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX2P35548 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX2P35548 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.65□□□□□ -1.51
MSX2P35548 AC020656.2-201ENST00000613291 5309 ntBASIC5.65□□□□□ -1.51
MSX2P35548 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
MSX2P35548 THAP12P9-201ENST00000503971 2360 ntBASIC5.65□□□□□ -1.51
MSX2P35548 AC012020.1-201ENST00000624541 1728 ntBASIC5.65□□□□□ -1.51
MSX2P35548 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX2P35548 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms