Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC007342.7-201ENST00000624610 2337 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC097461.1-201ENST00000568928 2821 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 RPL23P2-201ENST00000320371 421 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL6A1P12109 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL6A1P12109 RNU6-192P-201ENST00000391253 100 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL121978.1-201ENST00000402778 359 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL021331.1-201ENST00000402817 582 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL807761.1-201ENST00000417622 171 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AL008629.1-201ENST00000438615 184 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 ARL4AP3-201ENST00000441452 574 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AC022431.1-201ENST00000450941 438 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 CCDC11P1-201ENST00000503137 1162 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 RPF2P2-201ENST00000504693 896 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 RPS27AP18-201ENST00000515536 459 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC139365.2-201ENST00000517972 253 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 RFPL1S-203ENST00000539579 330 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC126177.5-201ENST00000549599 178 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC024909.2-201ENST00000553035 286 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 OR4H6P-201ENST00000563771 921 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC083837.1-201ENST00000565297 2994 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC6.42□□□□□ -1.38
COL6A1P12109 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 AC068790.6-201ENST00000602558 258 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC007349.4-201ENST00000608114 532 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 AC132068.1-201ENST00000623805 459 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 AC019080.5-201ENST00000624891 757 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.42□□□□□ -1.38
COL6A1P12109 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL6A1P12109 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 ELL2P3-201ENST00000457883 1602 ntBASIC6.42□□□□□ -1.38
COL6A1P12109 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL6A1P12109 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.42□□□□□ -1.38
COL6A1P12109 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
COL6A1P12109 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC005294.1-201ENST00000355509 281 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL6A1P12109 AL603865.2-201ENST00000401679 213 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 SFR1P1-201ENST00000403720 688 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC6.41□□□□□ -1.38
COL6A1P12109 QRSL1P2-201ENST00000418582 964 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC6.41□□□□□ -1.38
COL6A1P12109 TIMM9P2-201ENST00000419324 266 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AL513175.2-201ENST00000422071 443 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC6.41□□□□□ -1.38
COL6A1P12109 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 PA2G4P6-201ENST00000438325 1197 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC079922.1-201ENST00000443291 359 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 Z80107.2-201ENST00000445127 392 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC112187.1-201ENST00000455837 479 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AC092691.2-201ENST00000461787 803 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 RN7SL51P-201ENST00000468230 285 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC026414.1-201ENST00000504046 698 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 RNU6-1028P-201ENST00000517164 93 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms