Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC117490.2-201ENST00000610042 594 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC244107.2-201ENST00000611773 76 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AC091905.4-201ENST00000623432 202 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 AL356094.1-201ENST00000624663 1212 ntBASIC4.69□□□□□ -1.66
HOXD4P09016 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
HOXD4P09016 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXD4P09016 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXD4P09016 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
HOXD4P09016 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 TRIM51GP-201ENST00000534741 1350 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC005332.5-201ENST00000591222 2919 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 INTS6P1-201ENST00000504674 2530 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 SNORA51.8-201ENST00000384234 132 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 U3.28-201ENST00000391249 210 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 PTP4A1P1-201ENST00000420539 515 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC092017.2-201ENST00000427600 362 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 Z85994.2-201ENST00000434327 452 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 NDUFB4P8-201ENST00000435351 367 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 RPL31P44-201ENST00000447680 377 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC104634.1-201ENST00000452720 462 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 RPS3AP53-201ENST00000454716 778 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC092324.1-201ENST00000468671 324 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC006463.2-201ENST00000473326 348 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC006427.1-201ENST00000514359 712 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXD4P09016 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 OR11H3P-201ENST00000554547 982 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC009268.1-201ENST00000561352 1203 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AL731537.2-201ENST00000561565 951 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXD4P09016 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC233280.2-201ENST00000603917 1070 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC005014.3-201ENST00000605985 190 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC092574.1-201ENST00000609771 420 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC135068.5-201ENST00000624197 983 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXD4P09016 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
HOXD4P09016 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.68□□□□□ -1.66
HOXD4P09016 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXD4P09016 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXD4P09016 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXD4P09016 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXD4P09016 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 SNURFL-201ENST00000309296 343 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXD4P09016 RNA5SP123-201ENST00000363244 119 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 RNA5SP90-201ENST00000364801 99 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
HOXD4P09016 MT-RNR1-201ENST00000389680 954 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 SNORA40.4-201ENST00000390971 128 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 PPIAP9-201ENST00000403866 498 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 RN7SKP199-201ENST00000410325 305 ntBASIC4.67□□□□□ -1.66
HOXD4P09016 RNU2-22P-201ENST00000411266 212 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 243 ms