Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.68□□□□□ -1.66
LMX1BO60663 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 CYCSP6-201ENST00000434498 302 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 MTND2P21-201ENST00000436242 1042 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC019185.1-201ENST00000442718 389 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.68□□□□□ -1.66
LMX1BO60663 OR52E3P-201ENST00000452083 936 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 RPSAP50-201ENST00000481955 852 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 NPM1P29-201ENST00000483112 803 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC005412.2-201ENST00000492004 341 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 RPL5P23-201ENST00000496040 868 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC072052.1-201ENST00000496556 306 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.68□□□□□ -1.66
LMX1BO60663 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.68□□□□□ -1.66
LMX1BO60663 PRELID3BP5-201ENST00000508612 460 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 AC112673.1-201ENST00000513168 575 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.68□□□□□ -1.66
LMX1BO60663 AC027369.5-201ENST00000533838 755 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AP004607.2-201ENST00000533949 322 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC023538.1-201ENST00000534576 736 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC087888.1-201ENST00000550884 1254 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.68□□□□□ -1.66
LMX1BO60663 AL359219.2-201ENST00000555184 348 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AL390726.5-202ENST00000564800 256 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 MIR6748-201ENST00000610433 71 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
LMX1BO60663 AC090510.2-201ENST00000617465 629 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC068870.2-201ENST00000620635 389 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 AC092376.2-201ENST00000622621 4116 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LMX1BO60663 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.67□□□□□ -1.66
LMX1BO60663 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
LMX1BO60663 ZNF29P-201ENST00000225587 168 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC005294.1-201ENST00000355509 281 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 RNA5SP234-201ENST00000363916 119 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LMX1BO60663 DBIP1-201ENST00000401435 260 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 Z86062.1-201ENST00000406773 777 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 NACAP7-201ENST00000407371 609 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 Y_RNA.625-201ENST00000411256 107 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 AL606495.1-201ENST00000422100 813 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 REREP1Y-201ENST00000422655 198 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AL136231.1-201ENST00000429407 730 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.67□□□□□ -1.66
LMX1BO60663 SETP8-201ENST00000435341 628 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 ELOCP11-201ENST00000436690 332 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 MTCO2P20-201ENST00000437339 673 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 REREP2Y-201ENST00000439103 200 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 ARL5AP3-201ENST00000439327 386 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 RPL7P33-201ENST00000444159 742 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 ELOCP16-201ENST00000444494 332 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC006326.1-201ENST00000445465 787 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 RPL31P20-201ENST00000449593 360 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC108161.1-201ENST00000461060 402 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC092754.1-201ENST00000472975 479 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 RPL7AP6-201ENST00000477943 801 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 HMGB1P38-201ENST00000490557 577 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC020699.1-201ENST00000505161 445 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC092593.2-201ENST00000513866 913 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.67□□□□□ -1.66
LMX1BO60663 CDH12P4-201ENST00000517835 295 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 CDH12P3-201ENST00000517935 295 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.67□□□□□ -1.66
LMX1BO60663 CDH12P1-201ENST00000518435 295 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC118942.1-201ENST00000529674 1035 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 NPM1P35-201ENST00000533043 868 ntBASIC4.67□□□□□ -1.66
LMX1BO60663 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.67□□□□□ -1.66
LMX1BO60663 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LMX1BO60663 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.67□□□□□ -1.66
LMX1BO60663 AC023825.1-201ENST00000566704 1030 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms