Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GTF3AP5-201ENST00000442645 697 ntBASIC4.77□□□□□ -1.65
SOX3P41225 AL161722.1-201ENST00000446972 1032 ntBASIC4.77□□□□□ -1.65
SOX3P41225 MTND2P25-201ENST00000449028 610 ntBASIC4.77□□□□□ -1.65
SOX3P41225 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.77□□□□□ -1.65
SOX3P41225 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 EIF2S2P4-201ENST00000461070 984 ntBASIC4.77□□□□□ -1.65
SOX3P41225 RN7SL329P-201ENST00000467740 299 ntBASIC4.77□□□□□ -1.65
SOX3P41225 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.77□□□□□ -1.65
SOX3P41225 NDUFA5P12-201ENST00000503796 343 ntBASIC4.77□□□□□ -1.65
SOX3P41225 RNU6-889P-201ENST00000517189 103 ntBASIC4.77□□□□□ -1.65
SOX3P41225 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.77□□□□□ -1.65
SOX3P41225 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.77□□□□□ -1.65
SOX3P41225 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.77□□□□□ -1.65
SOX3P41225 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 AC011447.4-201ENST00000587562 111 ntBASIC4.77□□□□□ -1.65
SOX3P41225 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 AC090510.2-201ENST00000617465 629 ntBASIC4.77□□□□□ -1.65
SOX3P41225 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 AP002799.1-201ENST00000623552 423 ntBASIC4.77□□□□□ -1.65
SOX3P41225 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 SCARNA15-201ENST00000607520 4325 ntBASIC4.77□□□□□ -1.65
SOX3P41225 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SOX3P41225 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SOX3P41225 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SOX3P41225 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SOX3P41225 AC068446.1-201ENST00000556425 1549 ntBASIC4.77□□□□□ -1.65
SOX3P41225 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
SOX3P41225 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 SNURFL-201ENST00000309296 343 ntBASIC4.76□□□□□ -1.65
SOX3P41225 RNU4-4P-201ENST00000364588 130 ntBASIC4.76□□□□□ -1.65
SOX3P41225 RNU1-74P-201ENST00000384108 171 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AL356317.1-201ENST00000396110 1436 ntBASIC4.76□□□□□ -1.65
SOX3P41225 RPL10P10-201ENST00000403509 664 ntBASIC4.76□□□□□ -1.65
SOX3P41225 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.76□□□□□ -1.65
SOX3P41225 SNORA11B-201ENST00000408175 129 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.76□□□□□ -1.65
SOX3P41225 OR5M12P-201ENST00000423388 929 ntBASIC4.76□□□□□ -1.65
SOX3P41225 NPM1P22-201ENST00000427761 952 ntBASIC4.76□□□□□ -1.65
SOX3P41225 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX3P41225 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.76□□□□□ -1.65
SOX3P41225 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.76□□□□□ -1.65
SOX3P41225 AL138787.1-202ENST00000437804 898 ntBASIC4.76□□□□□ -1.65
SOX3P41225 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AC092647.3-201ENST00000443044 633 ntBASIC4.76□□□□□ -1.65
SOX3P41225 CCRL1P1-201ENST00000449542 1053 ntBASIC4.76□□□□□ -1.65
SOX3P41225 RN7SL814P-201ENST00000487715 300 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.76□□□□□ -1.65
SOX3P41225 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AC004980.4-201ENST00000513375 203 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AC013701.1-201ENST00000522657 465 ntBASIC4.76□□□□□ -1.65
SOX3P41225 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX3P41225 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AL133247.2-201ENST00000603236 482 ntBASIC4.76□□□□□ -1.65
SOX3P41225 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AL355802.4-201ENST00000607635 548 ntBASIC4.76□□□□□ -1.65
SOX3P41225 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 AC118658.2-201ENST00000618697 459 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AL133370.2-201ENST00000619934 439 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AC020978.9-201ENST00000624380 1141 ntBASIC4.76□□□□□ -1.65
SOX3P41225 AC073869.7-201ENST00000640874 297 ntBASIC4.76□□□□□ -1.65
SOX3P41225 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX3P41225 AC116158.1-201ENST00000560231 2129 ntBASIC4.76□□□□□ -1.65
SOX3P41225 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SOX3P41225 AC026523.2-201ENST00000625039 7739 ntBASIC4.76□□□□□ -1.65
SOX3P41225 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 STX3-208ENST00000641815 3236 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AC007342.5-201ENST00000571340 2142 ntBASIC4.75□□□□□ -1.65
SOX3P41225 CASC19-281ENST00000642118 1554 ntBASIC4.75□□□□□ -1.65
SOX3P41225 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX3P41225 RNA5SP223-201ENST00000365174 120 ntBASIC4.75□□□□□ -1.65
SOX3P41225 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SOX3P41225 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SOX3P41225 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX3P41225 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX3P41225 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX3P41225 BUD31P2-201ENST00000449374 300 ntBASIC4.75□□□□□ -1.65
SOX3P41225 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AP002345.1-201ENST00000456493 928 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AC097484.1-201ENST00000471148 389 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms