Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 VDAC1P10-201ENST00000416715 891 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AC092634.6-201ENST00000418558 192 ntBASIC6.76□□□□□ -1.33
MSX1P28360 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 COX6CP17-201ENST00000421389 185 ntBASIC6.76□□□□□ -1.33
MSX1P28360 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC023347.2-201ENST00000433994 462 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 IFNA20P-201ENST00000436840 528 ntBASIC6.76□□□□□ -1.33
MSX1P28360 HMGB1P18-201ENST00000438801 619 ntBASIC6.76□□□□□ -1.33
MSX1P28360 GTF2F2P2-201ENST00000445825 721 ntBASIC6.76□□□□□ -1.33
MSX1P28360 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 AL935212.3-201ENST00000450729 284 ntBASIC6.76□□□□□ -1.33
MSX1P28360 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 RPS3AP50-201ENST00000487064 803 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX1P28360 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 BTF3P13-201ENST00000513224 490 ntBASIC6.76□□□□□ -1.33
MSX1P28360 OR52H2P-201ENST00000514607 902 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX1P28360 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 DNAJC8P1-201ENST00000554535 372 ntBASIC6.76□□□□□ -1.33
MSX1P28360 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.76□□□□□ -1.33
MSX1P28360 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 NQO1-205ENST00000561500 891 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC012065.3-201ENST00000602736 439 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AL136985.2-201ENST00000607372 535 ntBASIC6.76□□□□□ -1.33
MSX1P28360 RNU6-87P-201ENST00000607561 108 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC093913.1-201ENST00000614178 329 ntBASIC6.76□□□□□ -1.33
MSX1P28360 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 AC119674.1-207ENST00000641355 633 ntBASIC6.76□□□□□ -1.33
MSX1P28360 AL592429.1-201ENST00000403909 1473 ntBASIC6.76□□□□□ -1.33
MSX1P28360 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
MSX1P28360 SELP-201ENST00000263686 3142 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC6.76□□□□□ -1.33
MSX1P28360 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 AC007998.4-201ENST00000612496 2533 ntBASIC6.76□□□□□ -1.33
MSX1P28360 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSX1P28360 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.76□□□□□ -1.33
MSX1P28360 COL6A4P1-202ENST00000487147 4317 ntBASIC6.75□□□□□ -1.33
MSX1P28360 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX1P28360 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX1P28360 AC112255.1-201ENST00000624070 2493 ntBASIC6.75□□□□□ -1.33
MSX1P28360 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC6.75□□□□□ -1.33
MSX1P28360 ENOX1-AS1-201ENST00000444442 3907 ntTSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 AC004014.2-201ENST00000623718 5122 ntBASIC6.75□□□□□ -1.33
MSX1P28360 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX1P28360 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX1P28360 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 OR9K1P-201ENST00000326513 941 ntBASIC6.75□□□□□ -1.33
MSX1P28360 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 SNORA32.2-201ENST00000384049 122 ntBASIC6.75□□□□□ -1.33
MSX1P28360 MIR506-201ENST00000384998 124 ntBASIC6.75□□□□□ -1.33
MSX1P28360 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 RNU2-8P-201ENST00000410727 190 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX1P28360 PPIAP23-201ENST00000420099 497 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC6.75□□□□□ -1.33
MSX1P28360 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 NQO1-204ENST00000439109 924 ntTSL 2 BASIC6.75□□□□□ -1.33
MSX1P28360 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 TREML3P-201ENST00000457327 501 ntBASIC6.75□□□□□ -1.33
MSX1P28360 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX1P28360 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX1P28360 RPL7P39-201ENST00000481157 744 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC013356.1-201ENST00000489027 564 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC079594.1-201ENST00000489757 331 ntBASIC6.75□□□□□ -1.33
MSX1P28360 RPS23-208ENST00000512493 443 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX1P28360 RNA5SP401-201ENST00000515920 127 ntBASIC6.75□□□□□ -1.33
MSX1P28360 BTF3P12-201ENST00000519620 469 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC6.75□□□□□ -1.33
MSX1P28360 OR5F2P-201ENST00000532761 941 ntBASIC6.75□□□□□ -1.33
MSX1P28360 ARL6IP1P1-201ENST00000545836 610 ntBASIC6.75□□□□□ -1.33
MSX1P28360 GNG2-215ENST00000557376 573 ntTSL 4 BASIC6.75□□□□□ -1.33
MSX1P28360 AC110588.1-201ENST00000559699 137 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 AC026470.2-201ENST00000561492 181 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms