Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.74□□□□□ -1.33
HMGB1P09429 RPL23AP37-201ENST00000479658 549 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 ATP5LP5-201ENST00000483050 299 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 RPL32P33-201ENST00000487023 394 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 RWDD4P1-201ENST00000488019 565 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.74□□□□□ -1.33
HMGB1P09429 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.74□□□□□ -1.33
HMGB1P09429 RNU5A-7P-201ENST00000515979 116 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 RNA5SP271-201ENST00000516700 88 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC6.74□□□□□ -1.33
HMGB1P09429 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.74□□□□□ -1.33
HMGB1P09429 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.74□□□□□ -1.33
HMGB1P09429 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 AC063977.5-201ENST00000601044 974 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AC067773.1-201ENST00000603284 1094 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AC108865.2-201ENST00000606881 432 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC6.74□□□□□ -1.33
HMGB1P09429 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AC234782.5-201ENST00000617723 324 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 AC009452.1-201ENST00000640823 606 ntBASIC6.74□□□□□ -1.33
HMGB1P09429 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
HMGB1P09429 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.74□□□□□ -1.33
HMGB1P09429 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.74□□□□□ -1.33
HMGB1P09429 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HMGB1P09429 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
HMGB1P09429 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 BCORP1-203ENST00000513194 5093 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 RNU6-1293P-201ENST00000384077 107 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 GLULP6-201ENST00000399502 913 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.73□□□□□ -1.33
HMGB1P09429 RPL24P2-201ENST00000421023 475 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 NPM1P34-201ENST00000428821 893 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.73□□□□□ -1.33
HMGB1P09429 TMEM183AP1-205ENST00000432739 290 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 RPL21P110-201ENST00000433345 446 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AL929288.2-201ENST00000446368 407 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 BX248409.1-201ENST00000455497 255 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.73□□□□□ -1.33
HMGB1P09429 AC015724.1-201ENST00000478577 156 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 RPS3AP15-201ENST00000483874 781 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AC008885.2-201ENST00000509506 930 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.73□□□□□ -1.33
HMGB1P09429 SNORA70.20-201ENST00000516848 126 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AC092121.1-201ENST00000569452 202 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.73□□□□□ -1.33
HMGB1P09429 AC079315.1-201ENST00000602952 623 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AL138895.2-201ENST00000603019 178 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 MIR6864-201ENST00000617935 70 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AC006249.1-201ENST00000621223 471 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 RNU6-156P-201ENST00000621869 107 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AL109659.3-201ENST00000624985 950 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 FRG1EP-201ENST00000634469 770 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 AL590396.4-201ENST00000636779 956 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC6.73□□□□□ -1.33
HMGB1P09429 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.73□□□□□ -1.33
HMGB1P09429 LINC01808-202ENST00000641680 1116 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 NSRP1P1-201ENST00000444067 1693 ntBASIC6.73□□□□□ -1.33
HMGB1P09429 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
HMGB1P09429 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HMGB1P09429 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
HMGB1P09429 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 AC114774.1-201ENST00000507410 1770 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 OR4F13P-202ENST00000560066 2054 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 AL592494.2-201ENST00000425455 1548 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms