Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CYP4F27P-201ENST00000514557 494 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.96□□□□□ -1.46
USP39Q53GS9 FABP5P12-201ENST00000515543 389 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.96□□□□□ -1.46
USP39Q53GS9 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.96□□□□□ -1.46
USP39Q53GS9 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 NPM1P5-201ENST00000557228 838 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.96□□□□□ -1.46
USP39Q53GS9 LSM1P2-201ENST00000604911 322 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 AL445670.1-201ENST00000618889 801 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 AC091965.5-201ENST00000624785 342 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.96□□□□□ -1.46
USP39Q53GS9 AC073869.7-201ENST00000640874 297 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 AL121839.2-201ENST00000565058 6943 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.96□□□□□ -1.46
USP39Q53GS9 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
USP39Q53GS9 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 DDX18P5-201ENST00000534547 1306 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.96□□□□□ -1.46
USP39Q53GS9 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
USP39Q53GS9 AC007159.1-201ENST00000566529 4706 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 AC087565.3-202ENST00000642085 1603 ntBASIC5.96□□□□□ -1.46
USP39Q53GS9 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 SNORD113-6-201ENST00000363345 75 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 RNA5SP500-201ENST00000364486 119 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 RN7SKP124-201ENST00000364730 341 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 MIR937-201ENST00000401271 86 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC004022.2-201ENST00000413824 193 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AL513175.2-201ENST00000422071 443 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 TNPO1P1-201ENST00000423641 1138 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AL445928.1-201ENST00000435545 222 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 MTND6P5-201ENST00000448266 512 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 OR52Y1P-201ENST00000452418 828 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 RN7SL515P-201ENST00000463999 297 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC104689.1-201ENST00000473356 768 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC022215.1-201ENST00000481770 362 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 XKRY-201ENST00000510392 1100 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 RPL12P22-201ENST00000519073 490 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 KCTD9P6-201ENST00000522306 950 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC027281.1-201ENST00000574178 758 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 RNU4ATAC-201ENST00000580972 127 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AL035411.2-201ENST00000604022 421 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC007349.4-201ENST00000608114 532 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC068944.2-201ENST00000610373 403 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AC092111.2-201ENST00000611627 1414 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AL139099.4-201ENST00000614802 114 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AL158163.2-201ENST00000619110 700 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AP000432.2-201ENST00000624164 2048 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 AP003072.4-201ENST00000624580 310 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC139713.2-210ENST00000641741 992 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 YES1P1-201ENST00000418510 1628 ntBASIC5.95□□□□□ -1.46
USP39Q53GS9 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.95□□□□□ -1.46
USP39Q53GS9 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.95□□□□□ -1.46
USP39Q53GS9 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms