Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RNA5SP326-201ENST00000363209 110 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RNA5SP27-201ENST00000363839 119 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MIR142-201ENST00000384835 87 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MTCO1P56-201ENST00000401674 224 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MTCO3P4-201ENST00000419236 787 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR10T1P-201ENST00000424327 947 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MRPS21P2-201ENST00000424704 264 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RPS4XP16-201ENST00000427198 791 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC002504.1-201ENST00000438281 691 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL592437.1-201ENST00000443781 492 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL050341.1-201ENST00000447743 313 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RPS27AP2-201ENST00000457576 465 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC074386.1-201ENST00000476560 767 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL136038.1-201ENST00000497246 351 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RNU6-1004P-201ENST00000516584 111 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 SNORA43.3-201ENST00000517240 103 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 OR11H3P-201ENST00000554547 982 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 HSPE1P2-201ENST00000554777 306 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MTND4P33-201ENST00000556706 766 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC023824.3-201ENST00000569003 562 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RBM22P1-201ENST00000578589 1214 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC063977.5-201ENST00000601044 974 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL049844.2-201ENST00000604280 628 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC096586.1-201ENST00000610267 561 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL138478.1-201ENST00000612252 832 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AP002782.1-201ENST00000623107 614 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC093671.1-201ENST00000624981 2929 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AC114774.1-201ENST00000507410 1770 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 UGT2B26P-201ENST00000508672 1613 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 AL161912.4-201ENST00000623889 2468 ntBASIC5.51□□□□□ -1.53
PTCHD3Q3KNS1 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RNA5SP46-201ENST00000362370 120 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 SNORA64.1-201ENST00000362600 132 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RNU4-51P-201ENST00000364206 140 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RNU6-1263P-201ENST00000384601 106 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 SNORD65C-201ENST00000390962 71 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 AC005042.1-201ENST00000393397 800 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 AL136310.1-201ENST00000404926 654 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RNU4-22P-201ENST00000411058 166 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RN7SKP293-201ENST00000411389 296 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RPS6P23-201ENST00000413224 722 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RPS7P9-201ENST00000414704 586 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 AL354868.1-201ENST00000417077 482 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 RPS3AP37-201ENST00000419176 745 ntBASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.5□□□□□ -1.53
PTCHD3Q3KNS1 AC010099.3-201ENST00000423896 409 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms