Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.17□□□□□ -1.42
RNF4P78317 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
RNF4P78317 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.16□□□□□ -1.42
RNF4P78317 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AL590763.1-201ENST00000398297 1545 ntBASIC6.16□□□□□ -1.42
RNF4P78317 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AC019072.1-201ENST00000604535 1551 ntBASIC6.16□□□□□ -1.42
RNF4P78317 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 PPIAP24-201ENST00000328558 471 ntBASIC6.16□□□□□ -1.42
RNF4P78317 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 RPL12P23-201ENST00000405880 490 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL033519.1-201ENST00000407266 307 ntBASIC6.16□□□□□ -1.42
RNF4P78317 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.16□□□□□ -1.42
RNF4P78317 AL450992.3-201ENST00000413192 568 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 AL929472.1-201ENST00000417484 429 ntBASIC6.16□□□□□ -1.42
RNF4P78317 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.16□□□□□ -1.42
RNF4P78317 AC007559.1-201ENST00000428736 355 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 FABP5P2-201ENST00000439042 408 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 UBE2V1P5-201ENST00000440070 405 ntBASIC6.16□□□□□ -1.42
RNF4P78317 SNRPEP8-201ENST00000442866 260 ntBASIC6.16□□□□□ -1.42
RNF4P78317 GAPDHP33-201ENST00000443168 1013 ntBASIC6.16□□□□□ -1.42
RNF4P78317 PAXBP1P1-201ENST00000449315 447 ntBASIC6.16□□□□□ -1.42
RNF4P78317 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 AC019084.1-201ENST00000457337 432 ntBASIC6.16□□□□□ -1.42
RNF4P78317 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 RN7SL561P-201ENST00000488553 281 ntBASIC6.16□□□□□ -1.42
RNF4P78317 RPL9P6-201ENST00000492764 598 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC098799.3-201ENST00000506095 438 ntBASIC6.16□□□□□ -1.42
RNF4P78317 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 NACAP5-201ENST00000509863 636 ntBASIC6.16□□□□□ -1.42
RNF4P78317 RNU6-885P-201ENST00000516607 104 ntBASIC6.16□□□□□ -1.42
RNF4P78317 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 BCAS2P1-201ENST00000528022 632 ntBASIC6.16□□□□□ -1.42
RNF4P78317 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.16□□□□□ -1.42
RNF4P78317 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 DUX4L52-201ENST00000549363 777 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.16□□□□□ -1.42
RNF4P78317 AC138915.2-201ENST00000569776 97 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AP003115.1-201ENST00000569849 463 ntBASIC6.16□□□□□ -1.42
RNF4P78317 MIR4732-201ENST00000581873 76 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.16□□□□□ -1.42
RNF4P78317 AC245052.7-201ENST00000601161 359 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC139493.1-201ENST00000604368 397 ntBASIC6.16□□□□□ -1.42
RNF4P78317 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.16□□□□□ -1.42
RNF4P78317 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC104985.2-201ENST00000620598 500 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC092794.2-201ENST00000620933 563 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AC068213.1-201ENST00000625124 226 ntBASIC6.16□□□□□ -1.42
RNF4P78317 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.16□□□□□ -1.42
RNF4P78317 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
RNF4P78317 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.16□□□□□ -1.42
RNF4P78317 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
RNF4P78317 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.16□□□□□ -1.42
RNF4P78317 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC6.16□□□□□ -1.42
RNF4P78317 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
RNF4P78317 AC127070.3-201ENST00000503695 3263 ntBASIC6.16□□□□□ -1.42
RNF4P78317 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.15□□□□□ -1.42
RNF4P78317 RNU4-12P-201ENST00000365233 139 ntBASIC6.15□□□□□ -1.42
RNF4P78317 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
RNF4P78317 RPL23AP29-201ENST00000397284 453 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AL589647.1-201ENST00000402485 466 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 RANP6-201ENST00000413691 644 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 AC017078.1-201ENST00000416146 368 ntBASIC6.15□□□□□ -1.42
RNF4P78317 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms