Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 SUMO2P15-201ENST00000604285 278 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AL512329.2-201ENST00000607350 548 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC007786.3-201ENST00000615154 596 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-368P-201ENST00000620928 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-538P-201ENST00000622329 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 BCORP1-203ENST00000513194 5093 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AP002512.4-202ENST00000641599 4530 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 AL078621.3-201ENST00000623707 2042 ntBASIC6.21□□□□□ -1.41
SMARCA1P28370 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SMARCA1P28370 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.21□□□□□ -1.41
SMARCA1P28370 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 MAPK10-338ENST00000641647 3362 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 ZNF29P-201ENST00000225587 168 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RNU4-7P-201ENST00000364758 141 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 RNU6-207P-201ENST00000384137 107 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RNU6-31P-201ENST00000384388 108 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AF228730.1-201ENST00000397972 663 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RPS26P13-201ENST00000419030 330 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC6.21□□□□□ -1.42
SMARCA1P28370 MTCO1P43-201ENST00000431831 488 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 NPM1P18-201ENST00000434232 732 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC016772.1-201ENST00000444170 1261 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC020779.1-201ENST00000478757 796 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RPL7P40-201ENST00000481703 745 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC058823.1-201ENST00000485315 474 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC105233.1-201ENST00000498840 781 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC093720.1-201ENST00000505681 714 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RN7SKP265-201ENST00000516448 223 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC6.21□□□□□ -1.42
SMARCA1P28370 BUD31P1-201ENST00000521828 359 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC021483.2-201ENST00000567415 758 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 RBM22P1-201ENST00000578589 1214 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC005252.1-201ENST00000604518 1063 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AC009974.1-201ENST00000608881 455 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC087683.2-201ENST00000611384 326 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 AC090527.3-201ENST00000619041 548 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.21□□□□□ -1.42
SMARCA1P28370 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 SEPT7P7-201ENST00000420492 1301 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SMARCA1P28370 SPATA2P1-201ENST00000431223 2055 ntBASIC6.21□□□□□ -1.42
SMARCA1P28370 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.21□□□□□ -1.42
SMARCA1P28370 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.2□□□□□ -1.42
SMARCA1P28370 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 CASC19-281ENST00000642118 1554 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.2□□□□□ -1.42
SMARCA1P28370 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 SNORA48.4-201ENST00000391089 134 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AL354868.1-201ENST00000417077 482 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.2□□□□□ -1.42
SMARCA1P28370 FAM96AP1-201ENST00000430879 482 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 OR52B5P-201ENST00000435337 951 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 RPL12P18-201ENST00000437175 325 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 MED6P1-201ENST00000439659 713 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.2□□□□□ -1.42
SMARCA1P28370 NPM1P19-201ENST00000450070 712 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms