Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.05□□□□□ -1.76
SDCBPO00560 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
SDCBPO00560 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDCBPO00560 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDCBPO00560 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDCBPO00560 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 AC116158.1-201ENST00000560231 2129 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 MIR195-201ENST00000385194 87 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.04□□□□□ -1.76
SDCBPO00560 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.04□□□□□ -1.76
SDCBPO00560 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.04□□□□□ -1.76
SDCBPO00560 GJA6P-201ENST00000415117 1042 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 BMS1P13-201ENST00000417301 885 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.04□□□□□ -1.76
SDCBPO00560 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.04□□□□□ -1.76
SDCBPO00560 SEPT7P3-201ENST00000455017 621 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AP000942.1-201ENST00000463969 747 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 RPS26P39-201ENST00000469206 341 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.04□□□□□ -1.76
SDCBPO00560 RN7SL97P-201ENST00000486780 299 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AC109462.1-201ENST00000491087 368 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 ARL4AP1-201ENST00000503220 705 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AC006499.3-201ENST00000506077 748 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.04□□□□□ -1.76
SDCBPO00560 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.04□□□□□ -1.76
SDCBPO00560 RNA5SP34-201ENST00000516887 130 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.04□□□□□ -1.76
SDCBPO00560 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.04□□□□□ -1.76
SDCBPO00560 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.04□□□□□ -1.76
SDCBPO00560 AL049839.1-201ENST00000556151 657 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.04□□□□□ -1.76
SDCBPO00560 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.04□□□□□ -1.76
SDCBPO00560 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AL022401.1-201ENST00000619498 108 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 AC006453.5-201ENST00000636451 619 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 LINC01739-205ENST00000641890 573 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
SDCBPO00560 AP001273.1-201ENST00000624493 3152 ntBASIC4.04□□□□□ -1.76
SDCBPO00560 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
SDCBPO00560 DDX18P4-201ENST00000511690 1966 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.03□□□□□ -1.76
SDCBPO00560 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SDCBPO00560 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 AP002530.1-201ENST00000405705 684 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 AC002524.1-201ENST00000411687 547 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 GTF3AP1-201ENST00000416942 1004 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 NPM1P22-201ENST00000427761 952 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC4.03□□□□□ -1.76
SDCBPO00560 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.03□□□□□ -1.76
SDCBPO00560 AL451139.1-201ENST00000434718 346 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 RHOT1P3-201ENST00000436571 331 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.03□□□□□ -1.76
SDCBPO00560 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.03□□□□□ -1.76
SDCBPO00560 AC022795.1-201ENST00000473808 480 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AC090142.2-201ENST00000483263 416 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 DEFB109F-201ENST00000491870 277 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 RN7SL558P-201ENST00000497468 299 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.03□□□□□ -1.76
SDCBPO00560 AC021146.3-201ENST00000511911 260 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 RN7SKP147-201ENST00000517154 244 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AC013701.1-201ENST00000522657 465 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 FKBP1BP1-201ENST00000553366 325 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.03□□□□□ -1.76
SDCBPO00560 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.03□□□□□ -1.76
SDCBPO00560 AC093249.4-201ENST00000564755 259 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AC107993.1-201ENST00000591343 684 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 MEMO1P5-201ENST00000604810 406 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 MIR6862-1-201ENST00000613016 70 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 MIR6862-2-201ENST00000614755 70 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 AL356752.1-201ENST00000615844 593 ntBASIC4.03□□□□□ -1.76
SDCBPO00560 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.03□□□□□ -1.76
SDCBPO00560 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SDCBPO00560 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SDCBPO00560 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SDCBPO00560 C4BPAP1-201ENST00000415474 1893 ntBASIC4.03□□□□□ -1.77
SDCBPO00560 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.03□□□□□ -1.77
SDCBPO00560 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.02□□□□□ -1.77
SDCBPO00560 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SDCBPO00560 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.02□□□□□ -1.77
SDCBPO00560 AC099654.2-201ENST00000433031 1980 ntBASIC4.02□□□□□ -1.77
SDCBPO00560 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms