Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 RN7SKP149-201ENST00000363008 344 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 RNU6-670P-201ENST00000364312 104 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 MIR137-201ENST00000385223 102 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL139039.2-201ENST00000407436 479 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 RNU6-564P-201ENST00000410983 104 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC013429.2-201ENST00000418798 781 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL356981.1-201ENST00000454879 684 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC231760.1-201ENST00000498002 260 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC105031.1-201ENST00000518550 476 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 BRD9P1-201ENST00000529855 560 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 MIR4660-201ENST00000583549 74 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL592494.3-201ENST00000609485 464 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC093671.1-201ENST00000624981 2929 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AL022311.1-201ENST00000623726 19416 ntBASIC4.98□□□□□ -1.61
LHX3Q9UBR4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.98□□□□□ -1.61
LHX3Q9UBR4 AC011755.1-201ENST00000623763 2049 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AL607077.1-201ENST00000401718 499 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 DHFRP5-201ENST00000406944 564 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 RNA5SP345-201ENST00000410646 108 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 RPS27P18-201ENST00000431701 247 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 OR52J1P-201ENST00000450596 932 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 IGLV2-34-201ENST00000490007 283 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC073073.1-201ENST00000493920 463 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AK4P6-201ENST00000505168 528 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 SEC11B-201ENST00000518383 499 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 MIR3934-201ENST00000579806 107 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 LSM1P2-201ENST00000604911 322 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 FAM25E-202ENST00000608562 189 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AL451049.1-201ENST00000608672 497 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 Mico1.1-201ENST00000611698 204 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC073869.7-201ENST00000640874 297 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC073869.10-201ENST00000642016 354 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC008758.3-201ENST00000507003 1829 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 AC087565.3-202ENST00000642085 1603 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 ZNF652P1-201ENST00000442420 1309 ntBASIC4.97□□□□□ -1.61
LHX3Q9UBR4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.97□□□□□ -1.61
LHX3Q9UBR4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
LHX3Q9UBR4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
LHX3Q9UBR4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 SAMMSON-226ENST00000642089 1582 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 RNU6-1263P-201ENST00000384601 106 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 REREP1Y-201ENST00000422655 198 ntBASIC4.96□□□□□ -1.62
LHX3Q9UBR4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.96□□□□□ -1.62
LHX3Q9UBR4 RPL35AP21-201ENST00000437667 333 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms