Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 MIR1271-201ENST00000408537 86 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 RN7SKP125-201ENST00000410481 302 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 EIF4A1P1-201ENST00000420241 934 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 NPM1P22-201ENST00000427761 952 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 RPL34P6-201ENST00000432390 345 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC073850.1-201ENST00000449243 255 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 SLC25A18P1-201ENST00000449385 454 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 RNU7-157P-201ENST00000459600 66 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 RN7SL727P-201ENST00000482164 296 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 RPL37AP8-201ENST00000494116 276 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 OR10D4P-201ENST00000525892 951 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC007497.1-201ENST00000610421 561 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 MIR6862-1-201ENST00000613016 70 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 MIR6862-2-201ENST00000614755 70 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AC022106.2-201ENST00000620114 757 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 AP002799.1-201ENST00000623552 423 ntBASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
VPS29Q9UBQ0 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 TLK1P1-201ENST00000456760 2440 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 RNA5SP305-201ENST00000362665 119 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 RNU4-4P-201ENST00000364588 130 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AL359643.1-201ENST00000404109 423 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 RNU2-22P-201ENST00000411266 212 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 GTF3AP1-201ENST00000416942 1004 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 LINC00993-201ENST00000420453 540 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 FABP7P2-201ENST00000429946 379 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 RPS26P2-201ENST00000440331 348 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 TPT1P1-201ENST00000458495 518 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC008953.1-201ENST00000497334 318 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 IGLV2-28-201ENST00000520681 304 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 BNIP3P41-202ENST00000616656 861 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AC015804.1-201ENST00000622935 435 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MAPK10-320ENST00000641462 6696 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AP001642.1-201ENST00000624727 2117 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MTCO1P15-201ENST00000529569 1526 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 AL445487.1-201ENST00000415694 1580 ntBASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS29Q9UBQ0 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 HMGB3P7-201ENST00000400214 611 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 RN7SKP229-201ENST00000410465 302 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC114755.2-201ENST00000413520 361 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 RPL12P43-201ENST00000420608 499 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms