Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 MTND4LP31-201ENST00000514859 294 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 PSMB7P1-201ENST00000556349 514 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC108359.1-201ENST00000616451 1211 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AL357559.1-201ENST00000622228 274 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC140479.3-201ENST00000418944 1126 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 SNORA51-201ENST00000606420 132 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC015908.5-201ENST00000623289 343 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC140479.6-201ENST00000633535 357 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.53□□□□□ -1.69
VPS13AQ96RL7 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC109446.4-201ENST00000623235 2755 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 RLIMP1-201ENST00000339626 1680 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC090804.1-201ENST00000448870 490 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC007688.1-201ENST00000475592 759 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 RNU6-709P-201ENST00000517257 104 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC084824.2-201ENST00000548906 345 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC107982.3-201ENST00000584957 985 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AL139124.1-201ENST00000609123 421 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 RNU6-1279P-201ENST00000383917 103 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 HMGN2P31-201ENST00000432430 273 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 SOD1P3-201ENST00000518682 454 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC069061.3-201ENST00000582254 823 ntBASIC4.52□□□□□ -1.69
VPS13AQ96RL7 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS13AQ96RL7 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 RNU1-59P-201ENST00000364829 162 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 MIR491-201ENST00000384877 84 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AL136231.1-201ENST00000429407 730 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 CYCSP32-201ENST00000440548 321 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC060780.2-201ENST00000589047 198 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 U1.25-201ENST00000614085 162 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 U1.34-201ENST00000618578 162 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 U1.31-201ENST00000620022 160 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 U6.105-201ENST00000637379 88 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 MT-RNR1-201ENST00000389680 954 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 RNA5SP49-201ENST00000516450 115 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms