Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL049874.4-201ENST00000557593 255 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC016180.1-201ENST00000567945 403 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC127024.5-201ENST00000580085 462 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 FAM60CP-201ENST00000591086 664 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 AL627230.1-201ENST00000613077 211 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 AL591926.8-201ENST00000616876 211 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 AC068870.2-201ENST00000620635 389 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 MIR6719-201ENST00000622428 87 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS35Q96QK1 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS35Q96QK1 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS35Q96QK1 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS35Q96QK1 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS35Q96QK1 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS35Q96QK1 AL731532.2-201ENST00000623542 1953 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.04□□□□□ -1.6
VPS35Q96QK1 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 ADAM5-202ENST00000399789 1942 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AL035079.1-201ENST00000405210 287 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 SNORA79B-201ENST00000410557 148 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 BX323845.1-201ENST00000432417 179 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 OR7E125P-201ENST00000443450 846 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 CEACAMP7-201ENST00000444105 496 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 RPS6P2-201ENST00000454208 705 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 RPL7AP6-201ENST00000477943 801 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 COX6B1P5-201ENST00000509843 249 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC004980.4-201ENST00000513375 203 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 NMNAT1P1-201ENST00000554095 876 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC087763.1-201ENST00000603391 286 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC093799.2-201ENST00000610062 578 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 MIR7155-201ENST00000615925 56 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC037198.3-201ENST00000616754 526 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS35Q96QK1 STX3-208ENST00000641815 3236 ntBASIC5.03□□□□□ -1.6
VPS35Q96QK1 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS35Q96QK1 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AL450345.1-202ENST00000605741 3881 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 OR10AB1P-202ENST00000641219 1686 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 SNORA70-201ENST00000384436 135 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 SNORA66-201ENST00000384792 133 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 SNORA77-201ENST00000408716 125 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 AL358176.3-201ENST00000420757 454 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 RPS29P9-201ENST00000440360 171 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 AL356390.1-201ENST00000455684 397 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 HMGN1P8-201ENST00000463578 288 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 RN7SL515P-201ENST00000463999 297 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 RPL21P6-201ENST00000479171 504 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 OR5M14P-201ENST00000506803 618 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 RN7SKP147-201ENST00000517154 244 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms