Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC006335.2-201ENST00000437993 330 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 RPS26P24-201ENST00000497656 331 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC004980.4-201ENST00000513375 203 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 RN7SKP141-201ENST00000516167 338 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AP001207.2-201ENST00000519490 539 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 DUXAP5-201ENST00000529668 529 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 RNU4-5P-201ENST00000607255 135 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 MTND2P41-201ENST00000637599 773 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC074101.1-201ENST00000637861 241 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 AC006511.3-201ENST00000624929 1783 ntBASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
SMC1BQ8NDV3 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC005261.2-201ENST00000593427 4258 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC232271.1-201ENST00000602455 2715 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 SNORA17.1-201ENST00000362945 126 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 Y_RNA.126-201ENST00000363382 111 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 SNORD56.4-201ENST00000363883 71 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 ATF1P1-201ENST00000406040 927 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 MYL6P5-201ENST00000412707 459 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 LIPT1P1-201ENST00000415870 1186 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 EIF4A1P1-201ENST00000420241 934 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 PNRC2P1-201ENST00000423940 420 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 USP9YP24-201ENST00000434374 697 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 OR6D1P-201ENST00000436165 939 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 USP9YP17-201ENST00000444617 696 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC105399.1-202ENST00000447303 205 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 snoU13.20-201ENST00000459180 104 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 TPM3P3-201ENST00000521343 354 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC023538.1-201ENST00000534576 736 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC027455.1-201ENST00000574104 594 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 MIR4284-201ENST00000578924 81 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC011447.4-201ENST00000587562 111 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AL392048.1-201ENST00000613946 534 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC004836.1-201ENST00000623032 634 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC091905.4-201ENST00000623432 202 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 MFSD8-213ENST00000641134 1327 ntBASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SMC1BQ8NDV3 AC007342.7-201ENST00000624610 2337 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms