Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC090953.1-201ENST00000604305 1092 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 QTRT1P1-201ENST00000604344 1078 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AP000894.4-201ENST00000610185 483 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC073575.2-201ENST00000614212 627 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC099494.2-201ENST00000623371 978 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AC073869.10-201ENST00000642016 354 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 ZNF733P-202ENST00000444809 1573 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL590763.1-201ENST00000398297 1545 ntBASIC4.51□□□□□ -1.69
SKA3Q8IX90 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SKA3Q8IX90 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.51□□□□□ -1.69
SKA3Q8IX90 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 SCARNA15-201ENST00000607520 4325 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 CASC19-204ENST00000641001 2055 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 UGT2B26P-201ENST00000508672 1613 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 RPL23P2-201ENST00000320371 421 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 RNU4-23P-201ENST00000362839 140 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 RNU6-891P-201ENST00000384280 111 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC013442.1-201ENST00000397347 228 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AL035079.1-201ENST00000405210 287 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 CYCSP10-201ENST00000417973 294 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 RCC2P2-201ENST00000422174 918 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC092647.2-201ENST00000452998 253 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 C1DP3-201ENST00000455013 423 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 RPL7AP10-201ENST00000481016 791 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 NIFKP7-201ENST00000503365 834 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 TCP11X3P-202ENST00000514289 1254 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC100784.1-201ENST00000522790 310 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AL358913.1-201ENST00000554342 121 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC087283.1-201ENST00000604029 1074 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 RPSAP73-201ENST00000614820 330 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 AC108359.1-201ENST00000616451 1211 ntBASIC4.5□□□□□ -1.69
SKA3Q8IX90 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SKA3Q8IX90 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
SKA3Q8IX90 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 RARSP1-201ENST00000542842 1418 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 RNU6-697P-201ENST00000363348 107 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 RPS20P25-201ENST00000412447 352 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC005033.1-201ENST00000428904 813 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 RN7SL443P-201ENST00000464331 290 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 NIP7P2-201ENST00000485801 544 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC008953.1-201ENST00000497334 318 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC073358.1-201ENST00000505671 684 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC113430.1-201ENST00000506872 718 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms