Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC009784.1-201ENST00000426484 460 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC104837.2-201ENST00000427236 424 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC073508.1-201ENST00000428866 656 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 NDUFB4P8-201ENST00000435351 367 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 RPS3AP53-201ENST00000454716 778 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 MTND6P32-201ENST00000457611 483 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC022133.1-201ENST00000490961 571 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 MTND3P3-201ENST00000505004 126 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC022360.1-201ENST00000521058 340 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AP001804.2-201ENST00000533932 910 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC006518.1-201ENST00000541449 943 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 MIR6820-201ENST00000611508 62 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 RMST_5.1-201ENST00000618704 126 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC253576.2-201ENST00000618815 580 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AL133370.2-201ENST00000619934 439 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC091953.3-201ENST00000623220 236 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP41Q3LFD5 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.55□□□□□ -1.52
USP41Q3LFD5 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP41Q3LFD5 AC003973.3-201ENST00000624863 2822 ntBASIC5.55□□□□□ -1.52
USP41Q3LFD5 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP41Q3LFD5 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP41Q3LFD5 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 Y_RNA.625-201ENST00000411256 107 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL049745.1-201ENST00000433953 286 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 SDR42E1P3-201ENST00000438345 502 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 ZNF736P6Y-201ENST00000447526 1213 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 CCRL1P1-201ENST00000449542 1053 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AP000797.2-201ENST00000475768 606 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 ENPP7P11-201ENST00000505915 627 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC006427.1-201ENST00000514359 712 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC008814.1-201ENST00000603797 406 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL450270.1-201ENST00000606160 391 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC084824.5-201ENST00000612009 413 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 MIR6798-201ENST00000612887 67 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL391262.2-201ENST00000622466 494 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC112694.2-201ENST00000623697 768 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AC110792.3-201ENST00000595906 1614 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 AL034549.2-201ENST00000618285 3373 ntBASIC5.54□□□□□ -1.52
USP41Q3LFD5 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP41Q3LFD5 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
USP41Q3LFD5 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP41Q3LFD5 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP41Q3LFD5 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.53□□□□□ -1.52
USP41Q3LFD5 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms