Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GAPDHP62-201ENST00000515313 990 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RNA5SP362-201ENST00000516048 118 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC136777.2-201ENST00000522979 358 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC109635.6-201ENST00000525487 1113 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC137627.1-201ENST00000545761 289 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AGGF1P7-201ENST00000562369 913 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC016839.1-201ENST00000578162 867 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC004223.2-201ENST00000590309 544 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC025857.2-201ENST00000602711 238 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AL035411.2-201ENST00000604022 421 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 FAM72A-208ENST00000607379 1139 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC090607.5-201ENST00000615692 224 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RN7SL544P-201ENST00000617232 284 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RN7SL763P-201ENST00000620922 284 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC022079.1-201ENST00000621546 602 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AP003485.2-201ENST00000623636 610 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 AC079776.5-201ENST00000641920 211 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD3Q3KNS1 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC007842.1-201ENST00000597336 2039 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 METTL21EP-201ENST00000298105 713 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC096921.1-201ENST00000411661 375 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 OR2AT2P-201ENST00000413438 905 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 HMGB1P49-201ENST00000418882 569 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AL513175.2-201ENST00000422071 443 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 RPS6P15-201ENST00000431996 751 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 RPL7P34-201ENST00000433316 712 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 HMGB3P10-201ENST00000434734 572 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AL589880.1-201ENST00000448271 287 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 PTGES3P5-201ENST00000455109 434 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC004263.1-201ENST00000479327 332 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC087672.1-201ENST00000479876 766 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC022215.1-201ENST00000481770 362 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC023050.2-201ENST00000544968 387 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 RBM22P12-201ENST00000567098 1255 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC145350.1-201ENST00000567426 208 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC005377.1-201ENST00000605126 456 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC092954.1-201ENST00000609121 445 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC015712.7-201ENST00000615211 635 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC231759.1-201ENST00000616455 597 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC073569.3-201ENST00000619055 682 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AP002967.1-201ENST00000624203 539 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC079416.3-201ENST00000624479 549 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 AC104964.3-201ENST00000606115 2860 ntBASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.52□□□□□ -1.53
PTCHD3Q3KNS1 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms