Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SCN4AP35499 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 ZFRP1-201ENST00000457579 2970 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 RNU1-94P-201ENST00000362627 173 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 SNORA71.2-201ENST00000364941 134 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 AL390316.1-201ENST00000406279 553 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 AL356387.2-201ENST00000422272 243 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.76□□□□□ -1.49
SCN4AP35499 AC009238.2-201ENST00000431026 355 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 RPS3AP54-201ENST00000435535 734 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.76□□□□□ -1.49
SCN4AP35499 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.76□□□□□ -1.49
SCN4AP35499 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.76□□□□□ -1.49
SCN4AP35499 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.76□□□□□ -1.49
SCN4AP35499 AC023043.4-201ENST00000612081 449 ntBASIC5.76□□□□□ -1.49
SCN4AP35499 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SCN4AP35499 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SCN4AP35499 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SCN4AP35499 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SCN4AP35499 RPS26P8-201ENST00000393490 348 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC011933.1-201ENST00000413334 321 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AC079809.1-201ENST00000415468 276 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC116533.1-201ENST00000459748 321 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SCN4AP35499 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 ZYXP1-201ENST00000617638 118 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AL445567.2-201ENST00000618935 498 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 RNA5SP196-201ENST00000625967 102 ntBASIC5.75□□□□□ -1.49
SCN4AP35499 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.75□□□□□ -1.49
SCN4AP35499 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SCN4AP35499 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 MIR208A-201ENST00000362287 71 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 SNORA73.1-201ENST00000363107 205 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 RN7SKP186-201ENST00000365371 303 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AL035079.1-201ENST00000405210 287 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 RNA5SP317-201ENST00000410176 116 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 RNA5SP311-201ENST00000411290 116 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 CEACAMP8-201ENST00000413902 580 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.74□□□□□ -1.49
SCN4AP35499 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 RPS12P10-201ENST00000427031 377 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC090602.1-201ENST00000469695 252 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC025164.1-201ENST00000496249 478 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 RNA5SP315-201ENST00000516340 116 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 RNA5SP312-201ENST00000517068 116 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.74□□□□□ -1.49
SCN4AP35499 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.74□□□□□ -1.49
SCN4AP35499 AC053481.3-201ENST00000577881 843 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 MIR4444-1-201ENST00000581696 74 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 MIR4660-201ENST00000583549 74 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 MIR4444-2-201ENST00000584390 74 ntBASIC5.74□□□□□ -1.49
SCN4AP35499 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SCN4AP35499 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SCN4AP35499 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SCN4AP35499 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms