Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NRBF2P3-201ENST00000432731 865 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 SCAND3P1-201ENST00000439854 1060 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 Z80107.2-201ENST00000445127 392 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC4P09017 AC093890.1-201ENST00000502554 540 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC4P09017 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC4P09017 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXC4P09017 BUD31P1-201ENST00000521828 359 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC4P09017 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC4P09017 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXC4P09017 AL390726.5-202ENST00000564800 256 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 MIR6780A-201ENST00000615089 68 ntBASIC4.84□□□□□ -1.63
HOXC4P09017 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC4P09017 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXC4P09017 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXC4P09017 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
HOXC4P09017 AL022322.2-201ENST00000624072 20397 ntBASIC4.84□□□□□ -1.64
HOXC4P09017 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HOXC4P09017 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXC4P09017 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC4P09017 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC4P09017 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXC4P09017 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC4P09017 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXC4P09017 NPM1P40-201ENST00000412758 733 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXC4P09017 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
HOXC4P09017 AL359265.2-201ENST00000434367 631 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXC4P09017 AC000111.2-201ENST00000448200 210 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 OR1H1P-201ENST00000448731 937 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC234781.3-201ENST00000452540 973 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 TPT1P1-201ENST00000458495 518 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 AP000942.1-201ENST00000463969 747 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.83□□□□□ -1.64
HOXC4P09017 ENPP7P9-201ENST00000514456 627 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 RFPL4AP5-201ENST00000514977 504 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 RN7SKP5-201ENST00000517045 272 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC4P09017 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC4P09017 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC4P09017 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC4P09017 AC233702.9-201ENST00000581528 203 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 MIR4270-201ENST00000581799 70 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXC4P09017 AC015849.6-201ENST00000605454 474 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC4P09017 BX005214.3-202ENST00000619809 325 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 TMEM30CP-203ENST00000637814 1035 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC4P09017 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXC4P09017 AC008758.3-201ENST00000507003 1829 ntBASIC4.83□□□□□ -1.64
HOXC4P09017 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXC4P09017 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC4P09017 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXC4P09017 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 NCLP2-201ENST00000416078 1462 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 MTHFD2P5-201ENST00000320415 844 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AC013442.1-201ENST00000397347 228 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AC007738.1-201ENST00000413892 348 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 TBCAP2-201ENST00000416175 326 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 BX510359.2-201ENST00000417920 305 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 QRSL1P2-201ENST00000418582 964 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 NPM1P48-201ENST00000436002 853 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC4P09017 NPM1P29-201ENST00000483112 803 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 SCARNA22-201ENST00000503991 125 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC4P09017 OR7H2P-201ENST00000513483 306 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 RPL23AP53-201ENST00000521854 457 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC4P09017 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXC4P09017 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
HOXC4P09017 AC093591.2-201ENST00000565254 3843 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 MIR4472-2-201ENST00000582069 67 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 MIR6820-201ENST00000611508 62 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 AL161616.1-201ENST00000611867 286 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
HOXC4P09017 AC133552.1-201ENST00000569988 4007 ntBASIC4.82□□□□□ -1.64
HOXC4P09017 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 147.3 ms