Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXD4P09016 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 MIR3934-201ENST00000579806 107 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 RN7SL435P-201ENST00000584418 282 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC009027.1-201ENST00000604510 479 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 AL353600.1-201ENST00000608148 251 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 EIF3FP1-201ENST00000613970 806 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 AP003400.3-201ENST00000624904 346 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AL353662.3-201ENST00000625131 237 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AL139254.3-201ENST00000641097 674 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC079097.1-201ENST00000512187 1399 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 MAPK10-263ENST00000641052 4307 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
HOXD4P09016 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXD4P09016 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 AC068870.1-201ENST00000563737 2455 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HOXD4P09016 PANDAR-201ENST00000629595 1506 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 RN7SKP247-201ENST00000411094 308 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC098592.2-201ENST00000413158 265 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 DDX39BP1-205ENST00000422507 192 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 RBMY2QP-201ENST00000429799 1147 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 RAB9AP5-201ENST00000437794 597 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 SNRPFP2-201ENST00000440710 251 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 GTF3AP5-201ENST00000442645 697 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 RAB9AP2-201ENST00000443911 597 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 ARL4AP1-201ENST00000503220 705 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC021193.1-201ENST00000511607 420 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 RN7SKP147-201ENST00000517154 244 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 BRD9P1-201ENST00000529855 560 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXD4P09016 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 KATNBL1P1-201ENST00000605192 748 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AP005131.7-201ENST00000610087 611 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 OR8G7P-201ENST00000616658 848 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC091932.2-201ENST00000623014 291 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 AL596275.2-204ENST00000641628 552 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AL596275.2-206ENST00000641957 626 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 OR51H2P-202ENST00000641424 3046 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
HOXD4P09016 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXD4P09016 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXD4P09016 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
HOXD4P09016 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXD4P09016 AC100778.3-201ENST00000580060 1750 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 AC092747.4-201ENST00000620519 1861 ntBASIC4.73□□□□□ -1.65
HOXD4P09016 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 AC120338.1-201ENST00000625074 1541 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC006206.1-201ENST00000544842 3387 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HOXD4P09016 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 RN7SKP153-201ENST00000365026 316 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 RNU6-891P-201ENST00000384280 111 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AL078599.1-201ENST00000402075 293 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC096644.3-201ENST00000416788 338 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 VN1R31P-201ENST00000417498 730 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.72□□□□□ -1.65
HOXD4P09016 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms