Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AL953862.2-201ENST00000603089 820 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AP001437.1-201ENST00000608783 456 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 uc_338.21-201ENST00000622458 147 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AC024940.5-201ENST00000622889 474 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AC073488.8-201ENST00000631952 757 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 AC124045.1-201ENST00000606008 1953 ntBASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
LIMD1Q9UGP4 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC008555.1-201ENST00000561778 2757 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 OR5D18-201ENST00000333976 991 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC092634.1-201ENST00000366505 199 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC245036.1-201ENST00000391727 309 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AL590762.1-201ENST00000391782 432 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RPL23AP32-201ENST00000395315 459 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RPS20P2-201ENST00000402520 389 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AL136131.1-201ENST00000406079 803 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP146-201ENST00000410242 334 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP261-201ENST00000410948 278 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 MTCO3P46-201ENST00000425787 232 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC018644.1-201ENST00000429934 551 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 PUDPP2-201ENST00000431423 643 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RN7SL502P-201ENST00000481857 290 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC108120.1-201ENST00000506543 991 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 RN7SKP183-201ENST00000517169 324 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 NANOGNBP2-201ENST00000544753 553 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC099489.2-201ENST00000574976 260 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 pRNA.12-201ENST00000614353 90 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 pRNA.3-201ENST00000615048 90 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 HOTTIP_2.1-201ENST00000616633 376 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 HDAC1P2-201ENST00000453661 1398 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AP002907.1-201ENST00000606361 1430 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 TMEM217-201ENST00000336655 1546 ntAPPRIS P3 TSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 WDR95P-201ENST00000425638 1542 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 LINC00622-201ENST00000562811 1570 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 CACNB4-263ENST00000637779 1772 ntTSL 5 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC092999.1-201ENST00000624004 1924 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 AC016930.1-201ENST00000468766 2205 ntBASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC7.66□□□□□ -1.18
LIMD1Q9UGP4 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC7.65□□□□□ -1.18
LIMD1Q9UGP4 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms