Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 AC079064.1-201ENST00000528365 362 ntBASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 AC084373.1-201ENST00000603311 235 ntBASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 uc_338.18-201ENST00000615451 175 ntBASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HDDC3Q8N4P3 AC100757.1-201ENST00000616872 1835 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 U3.3-201ENST00000362986 216 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 COX6B1P1-201ENST00000415962 213 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 GNG5P5-201ENST00000420444 220 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 Z85994.2-201ENST00000434327 452 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 MAPRE1P3-201ENST00000435438 796 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AL591623.2-201ENST00000449978 222 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 RPS29P33-201ENST00000456717 146 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC079168.1-201ENST00000458741 345 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 ABCC13-202ENST00000463099 3842 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 RN7SL197P-201ENST00000466981 299 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 BNIP3P1-201ENST00000547295 580 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 BMS1P7-201ENST00000602440 1052 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AL137072.1-201ENST00000603444 466 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC096553.1-201ENST00000605169 829 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC093799.2-201ENST00000610062 578 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC026523.2-201ENST00000625039 7739 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC135068.12-201ENST00000637370 931 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 THAP12P4-201ENST00000528321 2266 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 AC004158.1-201ENST00000564508 4319 ntBASIC5.27□□□□□ -1.57
HDDC3Q8N4P3 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC006206.1-201ENST00000544842 3387 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 RN7SKP185-201ENST00000362813 326 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 MT-TP-201ENST00000387461 68 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 OR8V1P-201ENST00000395193 873 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AL139039.2-201ENST00000407436 479 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 COX6CP17-201ENST00000421389 185 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 RPS4XP16-201ENST00000427198 791 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 MTCO1P45-201ENST00000431457 267 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 RPS29P10-201ENST00000439197 166 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ARL5AP3-201ENST00000439327 386 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC021205.1-201ENST00000468797 348 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 snoU109.6-201ENST00000516831 118 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 OR4A43P-201ENST00000532938 908 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms