Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC023158.1-201ENST00000561632 1025 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 ABI1P1-201ENST00000603375 1120 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 LINC01739-205ENST00000641890 573 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC002525.1-201ENST00000624392 1622 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 MT-RNR2-201ENST00000387347 1559 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AL031595.2-201ENST00000624215 19071 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 PROS2P-201ENST00000474651 1951 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AP004607.3-201ENST00000530354 3915 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL159987.1-201ENST00000347911 293 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 RNU1-43P-201ENST00000365052 165 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 GCNT6-201ENST00000379591 934 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 MIR137-201ENST00000385223 102 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 RPS4XP9-201ENST00000405151 780 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL357752.1-201ENST00000412817 349 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC108075.1-201ENST00000424692 529 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 BX119904.1-201ENST00000432026 348 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC096775.1-201ENST00000437724 448 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC239367.2-201ENST00000447309 705 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 GAPDHP14-201ENST00000450472 937 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC092324.1-201ENST00000468671 324 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 PDCL3P4-201ENST00000489621 720 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 BTG4P1-201ENST00000510421 183 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 IGHV3-63-201ENST00000518422 341 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 UBTFL9-201ENST00000534504 1148 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC025918.2-201ENST00000558683 763 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC063977.5-201ENST00000601044 974 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 BNIP3P31-201ENST00000604515 566 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC005084.1-201ENST00000605160 304 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AP000240.1-201ENST00000609910 452 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC083809.1-201ENST00000615051 472 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 MIR6758-201ENST00000620653 63 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 AC095038.2-201ENST00000621464 1070 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 MFSD8-219ENST00000641228 2559 ntBASIC5.32□□□□□ -1.56
COL28A1Q2UY09 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL28A1Q2UY09 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 CASC19-221ENST00000641309 1382 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC006484.1-201ENST00000435086 1884 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 SNORA51.8-201ENST00000384234 132 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 CHMP1B2P-201ENST00000399581 597 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL121878.1-201ENST00000418638 859 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL606495.1-201ENST00000422100 813 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC012519.1-201ENST00000424588 610 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL160175.1-201ENST00000428124 247 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 USP9YP9-201ENST00000429406 715 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL136231.1-201ENST00000429407 730 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 RPL12P18-201ENST00000437175 325 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MTCYBP12-201ENST00000440559 1134 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC023512.1-201ENST00000444513 499 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 GXYLT1P1-201ENST00000446657 490 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.31□□□□□ -1.56
COL28A1Q2UY09 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC004129.2-201ENST00000457229 287 ntBASIC5.31□□□□□ -1.56
COL28A1Q2UY09 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms