Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-347P-201ENST00000516658 105 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.18□□□□□ -1.58
HNF4AP41235 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.18□□□□□ -1.58
HNF4AP41235 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.18□□□□□ -1.58
HNF4AP41235 AC068993.1-201ENST00000546724 589 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.18□□□□□ -1.58
HNF4AP41235 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.18□□□□□ -1.58
HNF4AP41235 RBM22P1-201ENST00000578589 1214 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.18□□□□□ -1.58
HNF4AP41235 AL133247.2-201ENST00000603236 482 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 PSMA6P4-201ENST00000603247 718 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 SUGT1P3-202ENST00000604259 383 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.18□□□□□ -1.58
HNF4AP41235 AC079395.2-201ENST00000610982 737 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.18□□□□□ -1.58
HNF4AP41235 FRG1EP-201ENST00000634469 770 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HNF4AP41235 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HNF4AP41235 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HNF4AP41235 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HNF4AP41235 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HNF4AP41235 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HNF4AP41235 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HNF4AP41235 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HNF4AP41235 DDX18P3-201ENST00000404856 2007 ntBASIC5.18□□□□□ -1.58
HNF4AP41235 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HNF4AP41235 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 ASNSP1-201ENST00000518311 1939 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC004817.4-201ENST00000602396 3625 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 OR9G4-201ENST00000302957 984 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 AC083799.1-201ENST00000366451 910 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HNF4AP41235 OR4K12P-201ENST00000406538 961 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 RNA5SP487-201ENST00000410186 122 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 EIF4A1P3-201ENST00000411521 244 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 RPL35AP24-201ENST00000413846 330 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 AC019070.1-201ENST00000415008 1024 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 DPY19L1P2-201ENST00000426647 915 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 RPS20P1-201ENST00000434853 354 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.17□□□□□ -1.58
HNF4AP41235 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 AL049829.1-201ENST00000465411 156 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 EIF1P7-201ENST00000487533 337 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC106872.4-201ENST00000510050 523 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.17□□□□□ -1.58
HNF4AP41235 AC005520.3-201ENST00000602874 370 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 AL136370.1-201ENST00000608166 691 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 AL359513.1-201ENST00000614364 557 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 AC007204.2-201ENST00000615022 616 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.17□□□□□ -1.58
HNF4AP41235 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.17□□□□□ -1.58
HNF4AP41235 MUC2-202ENST00000613187 4845 ntBASIC5.17□□□□□ -1.58
HNF4AP41235 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.17□□□□□ -1.58
HNF4AP41235 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HNF4AP41235 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HNF4AP41235 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.16□□□□□ -1.58
HNF4AP41235 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 AC011755.1-201ENST00000623763 2049 ntBASIC5.16□□□□□ -1.58
HNF4AP41235 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HNF4AP41235 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HNF4AP41235 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.16□□□□□ -1.58
HNF4AP41235 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HNF4AP41235 AC011155.1-201ENST00000316512 456 ntBASIC5.16□□□□□ -1.58
HNF4AP41235 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms