Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A3P25940 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A3P25940 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 AC034229.2-201ENST00000566945 2508 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 AL031119.1-201ENST00000404707 1879 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 U3.35-201ENST00000408405 208 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 RGS17P1-201ENST00000423358 553 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 NFYAP1-201ENST00000431953 972 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 AC041039.1-201ENST00000485656 536 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 SUMO2P19-201ENST00000518920 295 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A3P25940 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.91□□□□□ -1.46
COL5A3P25940 AC084783.1-201ENST00000565846 910 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.91□□□□□ -1.46
COL5A3P25940 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.91□□□□□ -1.46
COL5A3P25940 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.91□□□□□ -1.46
COL5A3P25940 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL5A3P25940 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.9□□□□□ -1.46
COL5A3P25940 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL5A3P25940 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL5A3P25940 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL5A3P25940 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.9□□□□□ -1.46
COL5A3P25940 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL5A3P25940 AL389915.1-201ENST00000422463 466 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 AP001324.1-201ENST00000428553 399 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 RPS29P17-201ENST00000430795 166 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A3P25940 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A3P25940 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A3P25940 NIFKP7-201ENST00000503365 834 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A3P25940 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.9□□□□□ -1.47
COL5A3P25940 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A3P25940 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A3P25940 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC5.9□□□□□ -1.47
COL5A3P25940 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A3P25940 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL5A3P25940 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.9□□□□□ -1.47
COL5A3P25940 AL137058.3-201ENST00000624531 3099 ntBASIC5.9□□□□□ -1.47
COL5A3P25940 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.9□□□□□ -1.47
COL5A3P25940 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
COL5A3P25940 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
COL5A3P25940 TRIM51GP-201ENST00000534741 1350 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A3P25940 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 MIR383-201ENST00000362257 73 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 COX5BP7-201ENST00000414780 274 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A3P25940 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A3P25940 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A3P25940 RPL21P129-201ENST00000491732 478 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 AC073073.1-201ENST00000493920 463 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.89□□□□□ -1.47
COL5A3P25940 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 AL049830.4-201ENST00000555149 351 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A3P25940 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
COL5A3P25940 AC010168.2-201ENST00000562691 5428 ntBASIC5.89□□□□□ -1.47
COL5A3P25940 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A3P25940 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
COL5A3P25940 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
COL5A3P25940 TRGV7-201ENST00000427089 353 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 MRPL35P2-201ENST00000448009 511 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A3P25940 AC090058.1-201ENST00000498788 435 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A3P25940 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.88□□□□□ -1.47
COL5A3P25940 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 AC106785.1-201ENST00000565935 262 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 RN7SL176P-201ENST00000580352 264 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A3P25940 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A3P25940 AL023881.1-201ENST00000621088 301 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AC009120.7-201ENST00000623452 780 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms