Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SNORD116-26-201ENST00000516006 96 ntBASIC5.78□□□□□ -1.48
BDNFP23560 RNA5SP34-201ENST00000516887 130 ntBASIC5.78□□□□□ -1.48
BDNFP23560 SCARNA16.4-201ENST00000516956 187 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.78□□□□□ -1.48
BDNFP23560 AC126177.5-201ENST00000549599 178 ntBASIC5.78□□□□□ -1.48
BDNFP23560 CKS1BP1-201ENST00000555221 240 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.78□□□□□ -1.48
BDNFP23560 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.78□□□□□ -1.48
BDNFP23560 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.78□□□□□ -1.48
BDNFP23560 AC233266.2-201ENST00000567067 528 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.78□□□□□ -1.48
BDNFP23560 RBM22P1-201ENST00000578589 1214 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.78□□□□□ -1.48
BDNFP23560 AC079610.2-201ENST00000604818 690 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AL355802.4-201ENST00000607635 548 ntBASIC5.78□□□□□ -1.48
BDNFP23560 AP005131.7-201ENST00000610087 611 ntBASIC5.78□□□□□ -1.48
BDNFP23560 CR392039.4-201ENST00000624968 501 ntBASIC5.78□□□□□ -1.48
BDNFP23560 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.78□□□□□ -1.48
BDNFP23560 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
BDNFP23560 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
BDNFP23560 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BDNFP23560 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
BDNFP23560 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.78□□□□□ -1.48
BDNFP23560 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
BDNFP23560 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
BDNFP23560 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
BDNFP23560 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
BDNFP23560 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
BDNFP23560 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
BDNFP23560 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.77□□□□□ -1.49
BDNFP23560 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.77□□□□□ -1.49
BDNFP23560 FAR1P1-201ENST00000427163 934 ntBASIC5.77□□□□□ -1.49
BDNFP23560 GSTM5P1-201ENST00000434751 660 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.77□□□□□ -1.49
BDNFP23560 AL513321.1-201ENST00000441175 761 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AL353093.1-201ENST00000441292 436 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.77□□□□□ -1.49
BDNFP23560 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 RPL7P39-201ENST00000481157 744 ntBASIC5.77□□□□□ -1.49
BDNFP23560 NIP7P2-201ENST00000485801 544 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.77□□□□□ -1.49
BDNFP23560 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 AF186190.1-201ENST00000517470 480 ntBASIC5.77□□□□□ -1.49
BDNFP23560 IGLV2-28-201ENST00000520681 304 ntBASIC5.77□□□□□ -1.49
BDNFP23560 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 AC084824.2-201ENST00000548906 345 ntBASIC5.77□□□□□ -1.49
BDNFP23560 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
BDNFP23560 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.77□□□□□ -1.49
BDNFP23560 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 AC019322.1-201ENST00000571869 389 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 AC040174.2-201ENST00000602701 465 ntBASIC5.77□□□□□ -1.49
BDNFP23560 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.77□□□□□ -1.49
BDNFP23560 AL645927.2-201ENST00000618350 349 ntBASIC5.77□□□□□ -1.49
BDNFP23560 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.77□□□□□ -1.49
BDNFP23560 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 CASC19-222ENST00000641321 1173 ntBASIC5.77□□□□□ -1.49
BDNFP23560 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
BDNFP23560 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
BDNFP23560 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
BDNFP23560 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.77□□□□□ -1.49
BDNFP23560 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.77□□□□□ -1.49
BDNFP23560 CASC19-204ENST00000641001 2055 ntBASIC5.76□□□□□ -1.49
BDNFP23560 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.76□□□□□ -1.49
BDNFP23560 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.76□□□□□ -1.49
BDNFP23560 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 RNA5SP183-201ENST00000362452 119 ntBASIC5.76□□□□□ -1.49
BDNFP23560 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.76□□□□□ -1.49
BDNFP23560 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.76□□□□□ -1.49
BDNFP23560 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.76□□□□□ -1.49
BDNFP23560 RN7SKP278-201ENST00000410504 342 ntBASIC5.76□□□□□ -1.49
BDNFP23560 TATDN1P1-201ENST00000414123 891 ntBASIC5.76□□□□□ -1.49
BDNFP23560 MTND4P11-201ENST00000417020 1058 ntBASIC5.76□□□□□ -1.49
BDNFP23560 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.76□□□□□ -1.49
BDNFP23560 AL163193.1-201ENST00000444895 788 ntBASIC5.76□□□□□ -1.49
BDNFP23560 RN7SL447P-201ENST00000494711 245 ntBASIC5.76□□□□□ -1.49
BDNFP23560 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.76□□□□□ -1.49
BDNFP23560 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
BDNFP23560 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.76□□□□□ -1.49
BDNFP23560 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.76□□□□□ -1.49
BDNFP23560 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.76□□□□□ -1.49
BDNFP23560 AC004923.2-201ENST00000529649 369 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.76□□□□□ -1.49
BDNFP23560 SETP1-201ENST00000556014 845 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AC090515.3-201ENST00000560431 315 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AL731537.2-201ENST00000561565 951 ntBASIC5.76□□□□□ -1.49
BDNFP23560 LINC00557-201ENST00000563184 1279 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms