Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 RNA5SP123-201ENST00000363244 119 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 MIR192-201ENST00000384915 110 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CYB5AP4-201ENST00000396692 399 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC013442.1-201ENST00000397347 228 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 FABP12P1-201ENST00000401911 322 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL358178.1-201ENST00000407698 397 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC016397.1-201ENST00000412463 242 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CYCSP11-201ENST00000436426 315 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL606490.8-201ENST00000441624 319 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL627224.1-201ENST00000448334 444 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 MTND3P4-201ENST00000453537 303 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC097484.1-201ENST00000471148 389 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC098799.1-201ENST00000504752 800 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 GTF2F2P1-201ENST00000511083 675 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 RN7SKP253-201ENST00000516424 309 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC067904.2-201ENST00000517322 1283 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 MIMT1-201ENST00000597105 1050 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC023813.4-201ENST00000607580 580 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC112694.2-201ENST00000623697 768 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC145207.9-201ENST00000623802 325 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC107027.3-201ENST00000565095 3473 ntBASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHGA1Q9Y5H4 AC005332.5-201ENST00000591222 2919 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 SNURFL-201ENST00000309296 343 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 RNA5SP453-201ENST00000362503 119 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 RNU1-136P-201ENST00000384181 164 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 NUDT19P3-201ENST00000404698 555 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AL034374.1-201ENST00000406329 351 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 MTCYBP12-201ENST00000440559 1134 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 Z99127.2-201ENST00000441426 334 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 HMGB1P47-201ENST00000511281 589 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC108120.2-201ENST00000512973 294 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC034244.2-201ENST00000514668 858 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 YWHABP2-201ENST00000540201 713 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC087783.2-201ENST00000605070 562 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC012557.1-201ENST00000607115 611 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AC093799.2-201ENST00000610062 578 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AP002967.1-201ENST00000624203 539 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 AL139254.3-201ENST00000641097 674 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.17□□□□□ -1.58
PCDHGA1Q9Y5H4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 AL158152.1-201ENST00000602652 1435 ntBASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
PCDHGA1Q9Y5H4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms