Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TATDN1P1-201ENST00000414123 891 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL365338.1-201ENST00000422282 858 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 VN1R21P-201ENST00000426703 765 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC046176.1-201ENST00000435260 1170 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 Z84478.1-201ENST00000438230 1219 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC005297.1-201ENST00000444765 862 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL627224.1-201ENST00000448334 444 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 Z99714.1-201ENST00000450463 807 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC002553.2-201ENST00000453217 340 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RN7SL610P-201ENST00000463845 291 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RPL21P18-201ENST00000469899 480 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC073610.1-201ENST00000489971 396 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RPS27AP18-201ENST00000515536 459 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 IGLV2-28-201ENST00000520681 304 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC112191.2-201ENST00000522428 333 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MRPS16P1-201ENST00000523462 412 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC027544.3-201ENST00000535082 757 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 OR4U1P-201ENST00000554958 912 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC025857.2-201ENST00000602711 238 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL021707.7-201ENST00000607991 416 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RN7SL787P-201ENST00000613000 284 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC112694.2-201ENST00000623697 768 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC007382.1-201ENST00000624376 2618 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL049767.1-202ENST00000637826 242 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MFSD8-220ENST00000641243 1422 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MFSD8-219ENST00000641228 2559 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MTND5P31-201ENST00000419366 1374 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC022164.1-201ENST00000568767 2673 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MFSD8-239ENST00000641590 2479 ntBASIC5.77□□□□□ -1.48
DKK3Q9UBP4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 ZNF90P1-201ENST00000480493 1951 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 RNA5SP453-201ENST00000362503 119 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 RNU5B-4P-201ENST00000363508 111 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 MIR105-2-201ENST00000385083 81 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 OR2AT2P-201ENST00000413438 905 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AL158827.1-201ENST00000416300 391 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 BX510359.3-201ENST00000422168 306 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AL662874.1-201ENST00000426065 230 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 CRIP1P1-201ENST00000427567 185 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 FO393414.1-201ENST00000428697 1184 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 RPL6P5-201ENST00000445678 828 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AC023141.9-201ENST00000458734 412 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 CBX1P5-201ENST00000475330 559 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AC093890.1-201ENST00000502554 540 ntBASIC5.77□□□□□ -1.49
DKK3Q9UBP4 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms