Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC093535.2-201ENST00000624769 2326 ntBASIC5.15□□□□□ -1.58
VPS39Q96JC1 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS39Q96JC1 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS39Q96JC1 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS39Q96JC1 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
VPS39Q96JC1 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS39Q96JC1 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS39Q96JC1 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 RN7SKP74-201ENST00000362849 309 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC211486.3-201ENST00000412694 621 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 CASKP1-201ENST00000412870 582 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC093655.2-201ENST00000425735 631 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 CYCSP6-201ENST00000434498 302 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 CYCSP12-201ENST00000437729 300 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AL157884.3-201ENST00000448273 1184 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC023141.9-201ENST00000458734 412 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 RN7SL547P-201ENST00000490793 290 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC104109.1-201ENST00000498563 436 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 RNU6-513P-201ENST00000516104 104 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC126177.5-201ENST00000549599 178 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 SETP1-201ENST00000556014 845 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC020978.7-201ENST00000575953 1187 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 BX005214.3-202ENST00000619809 325 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 CYP4F35P-202ENST00000636121 390 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS39Q96JC1 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 AC087565.3-202ENST00000642085 1603 ntBASIC5.15□□□□□ -1.59
VPS39Q96JC1 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS39Q96JC1 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 RNU6-386P-201ENST00000362650 107 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 RNA5SP435-201ENST00000364044 108 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 RNU6-225P-201ENST00000384613 103 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 MIR143-201ENST00000385300 106 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC009804.1-201ENST00000400949 179 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC007064.3-201ENST00000422608 359 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 COX6CP13-201ENST00000428703 226 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AL353597.2-202ENST00000434901 373 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 PA2G4P6-201ENST00000438325 1197 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC004980.3-201ENST00000447046 365 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC021205.1-201ENST00000468797 348 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 BTG4P1-201ENST00000510421 183 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 GTF2F2P1-201ENST00000511083 675 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AP006245.2-201ENST00000522004 300 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 BMS1P7-201ENST00000602440 1052 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC004477.3-201ENST00000614061 590 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC145207.9-201ENST00000623802 325 ntBASIC5.14□□□□□ -1.59
VPS39Q96JC1 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS39Q96JC1 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS39Q96JC1 AC104260.2-201ENST00000623551 3497 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms