Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AC068538.1-201ENST00000376856 336 ntBASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AL158827.1-201ENST00000416300 391 ntBASIC1.53□□□□□ -2.17
SYNE1Q8NF91 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 RPEP3-201ENST00000425462 676 ntBASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 GLRXP2-201ENST00000555594 321 ntBASIC1.53□□□□□ -2.17
SYNE1Q8NF91 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.17
SYNE1Q8NF91 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RN7SKP113-201ENST00000363891 295 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC013442.1-201ENST00000397347 228 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL050305.1-201ENST00000399993 1230 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 NPM1P40-201ENST00000412758 733 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC069213.2-201ENST00000420238 366 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 LINC02210-201ENST00000444561 288 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC093815.1-201ENST00000508637 280 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 MIR4675-201ENST00000577898 77 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 MIR4420-201ENST00000583944 77 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 MED23-203ENST00000368058 4576 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RPS4XP16-201ENST00000427198 791 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC079168.1-201ENST00000458741 345 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC025857.2-201ENST00000602711 238 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC024220.1-201ENST00000603675 484 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RNA5SP487-201ENST00000410186 122 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC005154.2-201ENST00000438110 379 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC012123.2-201ENST00000485809 248 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RGS5-219ENST00000528019 512 ntTSL 4 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 ARL6IP1P1-201ENST00000545836 610 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC010632.3-201ENST00000611377 369 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 RNA5SP447-201ENST00000363749 119 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 ARL4AP5-201ENST00000404372 599 ntBASIC1.52□□□□□ -2.17
SYNE1Q8NF91 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC1.52□□□□□ -2.17
SYNE1Q8NF91 AC004690.1-201ENST00000418216 328 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms